KEGG 03420 Nucleotide excision repair
[list]

Species hsa(Human) mmu(Mouse) rno(Rat) gga(Chicken) dre(Zebrafish) dme(Fly) cel(Nematoda) mcc(Monkey) cfa(Dog) sce(Budding yeast) spo(Fission yeast) fca(Domestic cat)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hsa03420 Nucleotide excision repair 22
hsa03030 DNA replication 15
hsa03430 Mismatch repair 10
hsa03410 Base excision repair 7
hsa03440 Homologous recombination 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mmu03030 DNA replication 20
mmu03420 Nucleotide excision repair 18
mmu03430 Mismatch repair 11
mmu03410 Base excision repair 7
mmu04110 Cell cycle 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
rno03030 DNA replication 13
rno03420 Nucleotide excision repair 11
rno03430 Mismatch repair 11
rno03410 Base excision repair 5
rno03440 Homologous recombination 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gga03030 DNA replication 14
gga03420 Nucleotide excision repair 14
gga03430 Mismatch repair 10
gga03410 Base excision repair 5
gga04110 Cell cycle 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
dre03030 DNA replication 22
dre03420 Nucleotide excision repair 22
dre03430 Mismatch repair 13
dre03410 Base excision repair 10
dre03440 Homologous recombination 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
dme03420 Nucleotide excision repair 24
dme03030 DNA replication 16
dme03430 Mismatch repair 11
dme03410 Base excision repair 10
dme03440 Homologous recombination 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cel03420 Nucleotide excision repair 16
cel03030 DNA replication 13
cel03430 Mismatch repair 9
cel03410 Base excision repair 6
cel03440 Homologous recombination 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mcc03420 Nucleotide excision repair 14
mcc03030 DNA replication 13
mcc03430 Mismatch repair 7
mcc04110 Cell cycle 6
mcc03410 Base excision repair 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cfa03420 Nucleotide excision repair 12
cfa03030 DNA replication 11
cfa03430 Mismatch repair 9
cfa03410 Base excision repair 5
cfa03440 Homologous recombination 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sce03420 Nucleotide excision repair 24
sce03030 DNA replication 15
sce03430 Mismatch repair 13
sce03410 Base excision repair 7
sce03440 Homologous recombination 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
spo03420 Nucleotide excision repair 15
spo03030 DNA replication 6
spo03430 Mismatch repair 6
spo03410 Base excision repair 3
spo03022 Basal transcription factors 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
fca03420 Nucleotide excision repair 15
fca03030 DNA replication 13
fca03430 Mismatch repair 9
fca03410 Base excision repair 7
fca03440 Homologous recombination 3
Gene list in the network
Symbol Function*
CCNH cyclin H
CDK7 cyclin dependent kinase 7
DDB1 damage specific DNA binding protein 1
DDB2 damage specific DNA binding protein 2
ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit
ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit
ERCC5 ERCC excision repair 5, endonuclease
ERCC6 ERCC excision repair 6, chromatin remodeling factor
FDXR ferredoxin reductase
LIG1 DNA ligase 1
MCM4 minichromosome maintenance complex component 4
PCNA proliferating cell nuclear antigen
POLD1 DNA polymerase delta 1, catalytic subunit
POLD2 DNA polymerase delta 2, accessory subunit
POLE DNA polymerase epsilon, catalytic subunit
POLE2 DNA polymerase epsilon 2, accessory subunit
PRIM1 DNA primase subunit 1
RFC2 replication factor C subunit 2
RFC3 replication factor C subunit 3
RFC4 replication factor C subunit 4
RFC5 replication factor C subunit 5
RPA1 replication protein A1
TAF9 TATA-box binding protein associated factor 9
TPP2 tripeptidyl peptidase 2
XPC XPC complex subunit, DNA damage recognition and repair factor
CUL4A cullin 4A
TIMELESS timeless circadian regulator
PRPF8 pre-mRNA processing factor 8
POLD3 DNA polymerase delta 3, accessory subunit
RUVBL2 RuvB like AAA ATPase 2
TOPBP1 DNA topoisomerase II binding protein 1
PASK PAS domain containing serine/threonine kinase
HAUS5 HAUS augmin like complex subunit 5
POLA2 DNA polymerase alpha 2, accessory subunit
NCAPH2 non-SMC condensin II complex subunit H2
CEP72 centrosomal protein 72
WDR76 WD repeat domain 76
Symbol Function*
Dnmt1 DNA methyltransferase (cytosine-5) 1
Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6
Lig1 ligase I, DNA, ATP-dependent
Mcm3 minichromosome maintenance complex component 3
Mcm2 minichromosome maintenance complex component 2
Mcm4 minichromosome maintenance complex component 4
Mcm5 minichromosome maintenance complex component 5
Mcm7 minichromosome maintenance complex component 7
Mnat1 menage a trois 1
Nedd8 neural precursor cell expressed, developmentally down-regulated gene 8
Pcna proliferating cell nuclear antigen
Pold1 polymerase (DNA directed), delta 1, catalytic subunit
Pold2 polymerase (DNA directed), delta 2, regulatory subunit
Pole polymerase (DNA directed), epsilon
Pole2 polymerase (DNA directed), epsilon 2 (p59 subunit)
Prim1 DNA primase, p49 subunit
Rfc2 replication factor C (activator 1) 2
Rpa2 replication protein A2
Rrm1 ribonucleotide reductase M1
Taf1b TATA-box binding protein associated factor, RNA polymerase I, B
Gtf2h2 general transcription factor II H, polypeptide 2
Rbx1 ring-box 1
Gtf2h5 general transcription factor IIH, polypeptide 5
Rnaseh2b ribonuclease H2, subunit B
Pold3 polymerase (DNA-directed), delta 3, accessory subunit
Rpa1 replication protein A1
Rfc3 replication factor C (activator 1) 3
Meaf6 MYST/Esa1-associated factor 6
Rfc5 replication factor C (activator 1) 5
Tonsl tonsoku-like, DNA repair protein
Haus8 4HAUS augmin-like complex, subunit 8
Rfc4 replication factor C (activator 1) 4
Hat1 histone aminotransferase 1
Rars2 arginyl-tRNA synthetase 2, mitochondrial
Gtf2h3 general transcription factor IIH, polypeptide 3
Mms22l MMS22-like, DNA repair protein
Chtf18 CTF18, chromosome transmission fidelity factor 18
Symbol Function*
Pcna proliferating cell nuclear antigen
Mcm6 minichromosome maintenance complex component 6
Rpa2 replication protein A2
Pold1 DNA polymerase delta 1, catalytic subunit
Lig1 DNA ligase 1
Rfc2 replication factor C subunit 2
Dctpp1 dCTP pyrophosphatase 1
Rpa1 replication protein A1
Rfc4 replication factor C subunit 4
Rfc3 replication factor C subunit 3
Pold2 DNA polymerase delta 2, accessory subunit
Gins4 GINS complex subunit 4
Pold3 DNA polymerase delta 3, accessory subunit
Nxt1 nuclear transport factor 2-like export factor 1
Rfc5 replication factor C subunit 5
Mcm2 minichromosome maintenance complex component 2
Chaf1a chromatin assembly factor 1 subunit A
Rrm1 ribonucleotide reductase catalytic subunit M1
Xndc1 Xrcc1 N-terminal domain containing 1
Symbol Function*
PCNA proliferating cell nuclear antigen
RFC2 replication factor C subunit 2
ORC6 origin recognition complex subunit 6
NOL8 nucleolar protein 8
XPC XPC complex subunit, DNA damage recognition and repair factor
POLE DNA polymerase epsilon, catalytic subunit
RPA1 replication protein A1
MCM5 minichromosome maintenance complex component 5
RPA2 replication protein A2
RPA3 replication protein A3
RFC1 replication factor C subunit 1
POLE2 DNA polymerase epsilon 2, accessory subunit
RFC4 replication factor C subunit 4
MCM4 minichromosome maintenance complex component 4
ELP4 elongator acetyltransferase complex subunit 4
LIG1 DNA ligase 1
DUT deoxyuridine triphosphatase
DTYMK deoxythymidylate kinase
GTF2H3 general transcription factor IIH subunit 3
NUDT21 nudix hydrolase 21
RFC5 replication factor C subunit 5
POLD2 DNA polymerase delta 2, accessory subunit
Symbol Function*
dnmt1 DNA (cytosine-5-)-methyltransferase 1
prim1 DNA primase subunit 1
pcna proliferating cell nuclear antigen
rrm1 ribonucleotide reductase M1 polypeptide
rpa2 replication protein A2
tyms thymidylate synthetase
dhfr dihydrofolate reductase
cry5 cryptochrome circadian regulator 5
pole2 polymerase (DNA directed), epsilon 2
rfc3 replication factor C (activator 1) 3
pola1 polymerase (DNA directed), alpha 1
pola2 polymerase (DNA directed), alpha 2
anapc5 anaphase promoting complex subunit 5
ercc4 excision repair cross-complementation group 4
rpa1 replication protein A1
rnf168 ring finger protein 168
fen1 flap structure-specific endonuclease 1
rnaseh2a ribonuclease H2, subunit A
rpa3 replication protein A3
rfc4 replication factor C (activator 1) 4
gtf2h3 general transcription factor IIH, polypeptide 3
nutf2l nuclear transport factor 2, like
rfc5 replication factor C (activator 1) 5
hat1 histone acetyltransferase 1
gtf2h1 general transcription factor IIH, polypeptide 1
pcid2 PCI domain containing 2
rfc2 replication factor C (activator 1) 2
xpc xeroderma pigmentosum, complementation group C
accs 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
ankrd49 ankyrin repeat domain 49
zgc:110224 zgc:110224
pole polymerase (DNA directed), epsilon
nsmce4a NSE4 homolog A, SMC5-SMC6 complex component
pole4 polymerase (DNA-directed), epsilon 4, accessory subunit
gins2 GINS complex subunit 2
pold1 polymerase (DNA directed), delta 1, catalytic subunit
lig1 ligase I, DNA, ATP-dependent
si:dkey-119f1.1 si:dkey-119f1.1
ercc6 excision repair cross-complementation group 6
atad5a ATPase family AAA domain containing 5a
mms22l MMS22-like, DNA repair protein
nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase
wdr76 WD repeat domain 76
pold3 polymerase (DNA-directed), delta 3, accessory subunit
orc2 origin recognition complex, subunit 2
pold2 polymerase (DNA directed), delta 2, regulatory subunit
ddb2 damage-specific DNA binding protein 2
rnaseh2c ribonuclease H2, subunit C
rfc1 replication factor C (activator 1) 1
Symbol Function*
mei-9 meiotic 9
RPA3 Replication protein A3
CG8142 uncharacterized protein
Tfb4 Transcription factor B4
Ts Thymidylate synthase
RfC3 Replication factor C subunit 3
dgt2 dim gamma-tubulin 2
Pol32 Pol32 polymerase delta subunit
RPA2 Replication protein A2
Orc6 Origin recognition complex subunit 6
Mat1 Menage a trois 1
Xpc Xeroderma pigmentosum, complementation group C
Fen1 Flap endonuclease 1
PCNA Proliferating cell nuclear antigen
CG11788 uncharacterized protein
Xpd Xeroderma pigmentosum D
CG9752 uncharacterized protein
Mes4 Mesoderm-expressed 4
Ssrp Structure specific recognition protein
Nxt1 NTF2-related export protein 1
DNAlig1 DNA ligase 1
Pol31 Pol31 polymerase delta subunit
RfC4 Replication factor C subunit 4
DNApol-epsilon58 DNA polymerase epsilon 58kD subunit
hay haywire
l(3)72Ab lethal (3) 72Ab
DNApol-delta DNA polymerase delta
HipHop HP1-HOAP-interacting protein
CycH Cyclin H
Ssl1 Suppressor of stem-loop mutation
RpA-70 Replication Protein A 70
pic piccolo
timeout timeout
Cpsf73 Cleavage and polyadenylation specificity factor 73
Nup133 Nucleoporin 133kD
DNApol-epsilon255 DNA polymerase epsilon 255kD subunit
Nup98-96 Nucleoporin 98-96kD
CG4951 uncharacterized protein
Chrac-14 Chromatin accessibility complex 14kD protein
Symbol Function*
rpa-2 RPA_C domain-containing protein
rpa-1 putative replication factor A 73 kDa subunit
R05H5.3 Thioredoxin domain-containing protein
xpf-1 ERCC4 domain-containing protein
dna-2 DNA replication ATP-dependent helicase/nuclease
bub-3 Mitotic checkpoint protein bub-3
pole-4 CBFD_NFYB_HMF domain-containing protein
rnr-2 Ribonucleoside-diphosphate reductase small chain
T26A5.8 CBFD_NFYB_HMF domain-containing protein
isw-1 Chromatin-remodeling complex ATPase chain isw-1
rfc-4 Replication factor C subunit 4
ZK688.9 TIP41-like protein
F44B9.8 putative replication factor C subunit 5
gtf-2H2C General transcription factor IIH subunit 2
gtf-2H3 General Transcription Factor homolog
rfc-2 AAA domain-containing protein
pcn-1 Proliferating cell nuclear antigen
pole-2 putative DNA polymerase epsilon subunit 2
F12F6.7 putative DNA polymerase delta small subunit
rfc-3 RFC (DNA replication factor) family
F10C2.4 DNA polymerase delta catalytic subunit
T07F10.3 Uncharacterized protein
xpa-1 XPA_C domain-containing protein
gfl-1 uncharacterized protein
Symbol Function*
ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit
RFC2 replication factor C subunit 2
RFC5 replication factor C subunit 5
CCNH cyclin H
DDB1 damage specific DNA binding protein 1
POLE DNA polymerase epsilon, catalytic subunit
MNAT1 MNAT1 component of CDK activating kinase
POLE3 DNA polymerase epsilon 3, accessory subunit
MCM6 minichromosome maintenance complex component 6
MCM3 minichromosome maintenance complex component 3
MCM2 minichromosome maintenance complex component 2
RFC3 replication factor C subunit 3
RPA2 replication protein A2
MCM5 minichromosome maintenance complex component 5
RRM1 ribonucleotide reductase catalytic subunit M1
PCNA proliferating cell nuclear antigen
LIG1 DNA ligase 1
RPA1 replication protein A1
GTF2H3 general transcription factor IIH subunit 3
LOC106999852 uncharacterized LOC106999852
Symbol Function*
MYCBP MYC binding protein
NASP nuclear autoantigenic sperm protein
MCM6 minichromosome maintenance complex component 6
POLD3 DNA polymerase delta 3, accessory subunit
RRM1 ribonucleotide reductase catalytic subunit M1
PCNA proliferating cell nuclear antigen
RFC4 replication factor C subunit 4
STRBP spermatid perinuclear RNA binding protein
RPA3 replication protein A3
DDB2 damage specific DNA binding protein 2
RFC2 replication factor C subunit 2
POLE2 DNA polymerase epsilon 2, accessory subunit
POLD1 DNA polymerase delta 1, catalytic subunit
GTF2H5 general transcription factor IIH subunit 5
TRAPPC6A trafficking protein particle complex subunit 6A
LIG1 DNA ligase 1
RPA1 replication protein A1
RPA2 replication protein A2
MCM7 minichromosome maintenance complex component 7
Symbol Function*
IOC3 Ioc3p
CDC45 DNA replication initiation factor CDC45
GPN3 putative signal sequence-binding GTPase GPN3
RFA1 replication factor A subunit protein RFA1
CDC9 DNA ligase (ATP) CDC9
POL3 DNA-directed DNA polymerase delta POL3
RAD28 Rad28p
MSH6 mismatch repair ATPase MSH6
TFB3 TFIIH/NER complex subunit TFB3
PRP3 U4/U6-U5 snRNP complex subunit PRP3
RFC5 replication factor C subunit 5
POL30 proliferating cell nuclear antigen
CDC28 cyclin-dependent serine/threonine-protein kinase CDC28
DPB3 DNA polymerase epsilon noncatalytic subunit
SEC9 Sec9p
RAD2 ssDNA endodeoxyribonuclease RAD2
POL31 DNA-directed DNA polymerase delta subunit POL31
RAD26 DNA-dependent ATPase RAD26
NUP85 Nup85p
RFC2 replication factor C subunit 2
BYE1 Bye1p
RFC4 replication factor C subunit 4
MSH2 mismatch repair ATPase MSH2
RFC1 replication factor C subunit 1
SSL2 TFIIH/NER complex ATPase/helicase subunit SSL2
RNA14 cleavage polyadenylation factor subunit RNA14
RAD14 DNA repair protein RAD14
RFA2 Rfa2p
RFC3 replication factor C subunit 3
POL2 DNA polymerase epsilon catalytic subunit
IES2 Ies2p
POL1 DNA-directed DNA polymerase alpha catalytic subunit POL1
RKM1 protein-lysine N-methyltransferase
CCL1 TFIIH complex kinase subunit CCL1
TFB4 TFIIH/NER complex subunit TFB4
MSS18 Mss18p
DPB2 DNA polymerase epsilon noncatalytic subunit
RAD51 recombinase RAD51
RAD4 Rad4p
RAD3 TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
Symbol Function*
SPCC777.02 putative transcription factor
SPCC550.08 putative N-acetyltransferase
rhp42 DNA repair protein Rhp42
rhp26 SNF2 family helicase Rhp26
rfc5 putative DNA replication factor C complex subunit Rfc5
gtp1 putative GTP-binding protein Gtp1
tfb4 transcription factor TFIIH complex subunit Tfb4
psm1 mitotic cohesin complex subunit Psm1
cdc20 DNA polymerase epsilon catalytic subunit Pol2
ckn1 DNA repair ERCC8 family protein ckn1
rad13 DNA repair nuclease Rad13
adl1 putative DNA ligase
rfc3 DNA replication factor C complex subunit Rfc3
cdc17 ATP-dependent DNA ligase Cdc17
rad15 transcription factor TFIIH complex subunit Rad15
rfc4 putative DNA replication factor C complex subunit Rfc4
rhp41 DNA repair protein Rhp41
pcu4 cullin 4
rev3 putative DNA polymerase zeta catalytic subunit Rev3
srs2 UvrD subfamily ATP-dependent DNA helicase
Symbol Function*
POC1A POC1 centriolar protein A
PCNA proliferating cell nuclear antigen
TONSL tonsoku like, DNA repair protein
RFC3 replication factor C subunit 3
GINS4 GINS complex subunit 4
SUV39H1 suppressor of variegation 3-9 homolog 1
RPA2 replication protein A2
POLD1 DNA polymerase delta 1, catalytic subunit
MCM7 minichromosome maintenance complex component 7
EEFSEC eukaryotic elongation factor, selenocysteine-tRNA specific
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
GINS1 GINS complex subunit 1
DDB2 damage specific DNA binding protein 2
RFC5 replication factor C subunit 5
POLE2 DNA polymerase epsilon 2, accessory subunit
LIG1 DNA ligase 1
RFC2 replication factor C subunit 2
POLD2 DNA polymerase delta 2, accessory subunit
CETN2 centrin 2
POLE DNA polymerase epsilon, catalytic subunit
POLE3 DNA polymerase epsilon 3, accessory subunit
GTF2H4 general transcription factor IIH subunit 4
RFC4 replication factor C subunit 4
HIRIP3 HIRA interacting protein 3


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