| functional annotation |
| Function |
small nuclear ribonucleoprotein U5 subunit 40 |
|
| GO BP |
|
GO:0000398 [list] [network] mRNA splicing, via spliceosome
|
(327 genes)
|
IC
TAS
|
 |
|
GO:0000375 [list] [network] RNA splicing, via transesterification reactions
|
(330 genes)
|
TAS
|
|
|
GO:0008380 [list] [network] RNA splicing
|
(432 genes)
|
TAS
|
|
|
GO:0006396 [list] [network] RNA processing
|
(1428 genes)
|
TAS
|
|
|
| GO CC |
|
GO:0005682 [list] [network] U5 snRNP
|
(23 genes)
|
TAS
|
|
|
GO:0005732 [list] [network] sno(s)RNA-containing ribonucleoprotein complex
|
(30 genes)
|
NAS
|
|
|
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome
|
(30 genes)
|
IDA
|
|
|
GO:0071013 [list] [network] catalytic step 2 spliceosome
|
(87 genes)
|
IDA
|
|
|
GO:0016607 [list] [network] nuclear speck
|
(412 genes)
|
IDA
|
|
|
GO:0005654 [list] [network] nucleoplasm
|
(4086 genes)
|
TAS
|
|
|
GO:0005829 [list] [network] cytosol
|
(5345 genes)
|
IDA
|
|
|
| GO MF |
|
| KEGG |
hsa03040 [list] [network] Spliceosome (147 genes) |
 |
| Protein |
NP_004805.2
|
| BLAST |
NP_004805.2
|
| Orthologous |
[Ortholog page]
CG3436 (dme)
Snrnp40 (mmu)
snrp-40.2 (cel)
snrp-40.1 (cel)
Snrnp40 (rno)
snrnp40 (dre)
NWD1 (gga)
SNRNP40 (cfa)
SNRNP40 (mcc)
frs2 (spo)
SNRNP40 (fca)
|
Subcellular
localization
wolf |
|
nucl 5,
cyto_nucl 5,
cyto 3,
extr 1
|
(predict for NP_004805.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| hsa03040 |
Spliceosome |
3 |
 |
| hsa03018 |
RNA degradation |
2 |
 |
| hsa05016 |
Huntington disease |
2 |
 |
Genes directly connected with SNRNP40 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
CoexPub |
Entrez Gene ID* |
| 10.8 |
SF3A3 |
splicing factor 3a subunit 3 |
[detail] |
0 |
10946 |
| 9.7 |
PPP1R8 |
protein phosphatase 1 regulatory subunit 8 |
[detail] |
0 |
5511 |
| 9.4 |
RPA2 |
replication protein A2 |
[detail] |
0 |
6118 |
| 7.8 |
RBBP4 |
RB binding protein 4, chromatin remodeling factor |
[detail] |
0 |
5928 |
| 7.5 |
C1orf174 |
chromosome 1 open reading frame 174 |
[detail] |
0 |
339448 |
| 7.4 |
PEF1 |
penta-EF-hand domain containing 1 |
[detail] |
0 |
553115 |
| 7.2 |
DNAJC8 |
DnaJ heat shock protein family (Hsp40) member C8 |
[detail] |
0 |
22826 |
| 7.0 |
PRPF38A |
pre-mRNA processing factor 38A |
[detail] |
0 |
84950 |
| 6.8 |
HDAC1 |
histone deacetylase 1 |
[detail] |
0 |
3065 |
| 6.3 |
CNOT9 |
CCR4-NOT transcription complex subunit 9 |
[detail] |
0 |
9125 |
| 5.1 |
LRRC42 |
leucine rich repeat containing 42 |
[detail] |
0 |
115353 |
|
Coexpressed
gene list |
[Coexpressed gene list for SNRNP40]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
| Tissue specificity* |
|
SNRNP40 Gene
