COXPRESdb : GeneID search result

[←][→] hsa SNRPD3 Gene

functional annotation

Function

small nuclear ribonucleoprotein D3 polypeptide

GO BP

GO:0008334 [list] [network] histone mRNA metabolic process	(28 genes)	TAS
GO:0006369 [list] [network] termination of RNA polymerase II transcription	(34 genes)	TAS
GO:0000387 [list] [network] spliceosomal snRNP assembly	(52 genes)	IBA IDA TAS
GO:0051170 [list] [network] import into nucleus	(118 genes)	TAS
GO:0006479 [list] [network] protein methylation	(131 genes)	IDA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(327 genes)	IC IDA TAS
GO:0008380 [list] [network] RNA splicing	(432 genes)	TAS

GO CC

GO:0000243 [list] [network] commitment complex	(5 genes)	IBA
GO:0034715 [list] [network] pICln-Sm protein complex	(6 genes)	IBA IDA
GO:0005683 [list] [network] U7 snRNP	(7 genes)	IDA
GO:0005687 [list] [network] U4 snRNP	(12 genes)	IBA IDA
GO:0034709 [list] [network] methylosome	(12 genes)	IDA
GO:0034719 [list] [network] SMN-Sm protein complex	(18 genes)	IBA IDA
GO:0005697 [list] [network] telomerase holoenzyme complex	(22 genes)	IDA
GO:0005682 [list] [network] U5 snRNP	(23 genes)	IBA
GO:0005686 [list] [network] U2 snRNP	(25 genes)	IBA
GO:0005689 [list] [network] U12-type spliceosomal complex	(29 genes)	IBA IDA
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome	(30 genes)	IDA
GO:0005685 [list] [network] U1 snRNP	(33 genes)	IBA IDA
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex	(42 genes)	IDA
GO:0097526 [list] [network] spliceosomal tri-snRNP complex	(43 genes)	IBA
GO:0071005 [list] [network] U2-type precatalytic spliceosome	(50 genes)	IDA
GO:0071011 [list] [network] precatalytic spliceosome	(53 genes)	IBA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(87 genes)	IBA IDA
GO:0030532 [list] [network] small nuclear ribonucleoprotein complex	(99 genes)	TAS
GO:0005681 [list] [network] spliceosomal complex	(191 genes)	TAS
GO:0016604 [list] [network] nuclear body	(833 genes)	IDA
GO:0005654 [list] [network] nucleoplasm	(4086 genes)	IDA TAS
GO:0005829 [list] [network] cytosol	(5345 genes)	IDA TAS
GO:0005634 [list] [network] nucleus	(8115 genes)	IDA

GO MF

GO:0071209 [list] [network] U7 snRNA binding	(3 genes)	IPI
GO:0071208 [list] [network] histone pre-mRNA DCP binding	(4 genes)	ISS
GO:0070034 [list] [network] telomerase RNA binding	(22 genes)	IPI
GO:0003723 [list] [network] RNA binding	(1968 genes)	HDA IBA IPI
GO:0019899 [list] [network] enzyme binding	(2058 genes)	IPI
GO:0005515 [list] [network] protein binding	(13898 genes)	IPI

KEGG

hsa03040 [list] [network] Spliceosome (147 genes)

hsa05322 [list] [network] Systemic lupus erythematosus (136 genes)

Protein

NP_001265585.1 NP_004166.1

BLAST

NP_001265585.1 NP_004166.1

Orthologous

[Ortholog page] SmD3 (dme) Snrpd3 (mmu) snr-1 (cel) snrpd3l (dre) snrpd3 (dre) SNRPD3 (gga) SNRPD3 (cfa) Snrpd3 (rno) SNRPD3 (mcc) SMD3 (sce) SPAC4D7.02c (spo) SNRPD3 (fca) LOC101097968 (fca) LOC102152884 (cfa) LOC103694291 (rno)

Subcellular
localization
wolf

cyto 7, cyto_nucl 5, nucl 2	(predict for NP_001265585.1)
cyto 7, cyto_nucl 5, nucl 2	(predict for NP_004166.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hsa04714	Thermogenesis	8
hsa05012	Parkinson disease	8
hsa00190	Oxidative phosphorylation	7
hsa04932	Non-alcoholic fatty liver disease	7
hsa05010	Alzheimer disease	7

Genes directly connected with SNRPD3 on the network
coex z^*	Locus	Function^*	Coexpression detail	CoexPub	Entrez Gene ID^*
8.7	UQCR10	ubiquinol-cytochrome c reductase, complex III subunit X	[detail]	0	29796
8.2	RANBP1	RAN binding protein 1	[detail]	0	5902
7.7	XRCC6	X-ray repair cross complementing 6	[detail]	0	2547
6.7	RBM8A	RNA binding motif protein 8A	[detail]	1	9939

Coexpressed
gene list

Gene expression

All samples

Tissue specificity^*

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