GO:0070828 heterochromatin organization

65 hsa genes in this database.
42 mmu genes in this database.
42 rno genes in this database.
4 gga genes in this database.
15 dre genes in this database.
46 dme genes in this database.
13 cel genes in this database.
1 cfa genes in this database.
77 sce genes in this database.
68 spo genes in this database.

[QuickGO]

term: heterochromatin organization
goid: GO:0070828


Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species Symbol Gene
coexpression
Locus
page
Full name* Entrez Gene ID Evidence*
hsa CDKN2A cyclin dependent kinase inhibitor 2A 1029
hsa DNMT3A DNA methyltransferase 3 alpha 1788
hsa MECOM MDS1 and EVI1 complex locus 2122 ISS
hsa EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit 2145
hsa H3-3A H3.3 histone A 3020
hsa H3-3B H3.3 histone B 3021
hsa HDAC1 histone deacetylase 1 3065
hsa HDAC2 histone deacetylase 2 3066
hsa HELLS helicase, lymphoid specific 3070
hsa HMGA1 high mobility group AT-hook 1 3159
hsa LOXL2 lysyl oxidase like 2 4017 IMP
hsa MTHFR methylenetetrahydrofolate reductase 4524
hsa SNAI1 snail family transcriptional repressor 1 6615 ISS
hsa SUV39H1 suppressor of variegation 3-9 homolog 1 6839
hsa UBE2B ubiquitin conjugating enzyme E2 B 7320
hsa HMGA2 high mobility group AT-hook 2 8091
hsa H4C9 H4 clustered histone 9 8294
hsa H3C1 H3 clustered histone 1 8350
hsa H3C4 H3 clustered histone 4 8351
hsa H3C3 H3 clustered histone 3 8352
hsa H3C6 H3 clustered histone 6 8353
hsa H3C11 H3 clustered histone 11 8354
hsa H3C8 H3 clustered histone 8 8355
hsa H3C12 H3 clustered histone 12 8356
hsa H3C10 H3 clustered histone 10 8357
hsa H3C2 H3 clustered histone 2 8358
hsa H4C1 H4 clustered histone 1 8359
hsa H4C4 H4 clustered histone 4 8360
hsa H4C6 H4 clustered histone 6 8361
hsa H4C12 H4 clustered histone 12 8362
hsa H4C11 H4 clustered histone 11 8363
hsa H4C3 H4 clustered histone 3 8364
hsa H4C8 H4 clustered histone 8 8365
hsa H4C2 H4 clustered histone 2 8366
hsa H4C5 H4 clustered histone 5 8367
hsa H4C13 H4 clustered histone 13 8368
hsa H4C14 H4 clustered histone 14 8370
hsa SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 8467
hsa MBD2 methyl-CpG binding domain protein 2 8932
hsa H3C7 H3 clustered histone 7 8968
hsa SETDB1 SET domain bifurcated histone lysine methyltransferase 1 9869 IBA
hsa BAZ2A bromodomain adjacent to zinc finger domain 2A 11176
hsa BAHD1 bromo adjacent homology domain containing 1 22893
hsa SIRT2 sirtuin 2 22933
hsa SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 23347
hsa RRP8 ribosomal RNA processing 8 23378
hsa SIRT1 sirtuin 1 23411
hsa HP1BP3 heterochromatin protein 1 binding protein 3 50809 IBA,IMP
hsa MBD3 methyl-CpG binding domain protein 3 53615
hsa POLE3 DNA polymerase epsilon 3, accessory subunit 54107
hsa NRDE2 NRDE-2, necessary for RNA interference, domain containing 55051
hsa ZNFX1 zinc finger NFX1-type containing 1 57169
hsa BEND3 BEN domain containing 3 57673
hsa PRDM16 PR/SET domain 16 63976 ISS
hsa SETD7 SET domain containing 7, histone lysine methyltransferase 80854 IDA
hsa SETDB2 SET domain bifurcated histone lysine methyltransferase 2 83852 IBA
hsa FAM172A family with sequence similarity 172 member A 83989
hsa H4-16 H4 histone 16 121504
hsa H3C14 H3 clustered histone 14 126961
hsa FAM172BP family with sequence similarity 172 member B, pseudogene 131909
hsa CENPV centromere protein V 201161
hsa H3C15 H3 clustered histone 15 333932
hsa H3-5 H3.5 histone 440093
hsa H4C15 H4 clustered histone 15 554313
hsa H3C13 H3 clustered histone 13 653604
mmu Cdkn2a cyclin dependent kinase inhibitor 2A 12578
mmu Dnmt3a DNA methyltransferase 3A 13435
mmu Dnmt3b DNA methyltransferase 3B 13436
mmu Mecom MDS1 and EVI1 complex locus 14013 IMP
mmu Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit 14055
mmu H3f3a H3.3 histone A 15078
mmu H3f3b H3.3 histone B 15081
mmu Hdac2 histone deacetylase 2 15182
mmu Hells helicase, lymphoid specific 15201
mmu Hmga1 high mobility group AT-hook 1 15361
mmu Hmga2 high mobility group AT-hook 2 15364
mmu Hp1bp3 heterochromatin protein 1, binding protein 3 15441 IBA,ISO
mmu Mbd2 methyl-CpG binding domain protein 2 17191
mmu Mbd3 methyl-CpG binding domain protein 3 17192
mmu Mthfr methylenetetrahydrofolate reductase 17769
mmu Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 20586
mmu Snai1 snail family zinc finger 1 20613 IMP
mmu Suv39h1 suppressor of variegation 3-9 1 20937
mmu Ubtf upstream binding transcription factor, RNA polymerase I 21429
mmu Ube2b ubiquitin-conjugating enzyme E2B 22210
mmu Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) 59001
mmu Fam172a family with sequence similarity 172, member A 68675
mmu Prdm16 PR domain containing 16 70673 IMP
mmu Cenpv centromere protein V 73139
mmu Setd7 SET domain containing (lysine methyltransferase) 7 73251 IMP,ISO
mmu Smchd1 SMC hinge domain containing 1 74355
mmu Setdb1 SET domain, bifurcated 1 84505 IBA
mmu Sirt1 sirtuin 1 93759
mmu Arid1a AT rich interactive domain 1A (SWI-like) 93760
mmu Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 93762
mmu Loxl2 lysyl oxidase-like 2 94352 ISO
mmu Znfx1 zinc finger, NFX1-type containing 1 98999
mmu Rrp8 ribosomal RNA processing 8 101867
mmu Hmga1b high mobility group AT-hook 1B 111241
mmu Baz2a bromodomain adjacent to zinc finger domain, 2A 116848
mmu Dicer1 dicer 1, ribonuclease type III 192119
mmu Nrde2 nrde-2 necessary for RNA interference, domain containing 217827
mmu Wdhd1 WD repeat and HMG-box DNA binding protein 1 218973
mmu Bahd1 bromo adjacent homology domain containing 1 228536
mmu Setdb2 SET domain, bifurcated 2 239122 IBA
mmu Bend3 BEN domain containing 3 331623
mmu Hdac1 histone deacetylase 1 433759
rno Cdkn2a cyclin-dependent kinase inhibitor 2A 25163
rno Ubtf upstream binding transcription factor 25574
rno Ube2b ubiquitin-conjugating enzyme E2B 81816
rno Hmga2 high mobility group AT-hook 2 84017
rno Hdac2 histone deacetylase 2 84577
rno Snai1 snail family transcriptional repressor 1 116490 ISO
rno H3f3b H3.3 histone B 117056
rno Hmga1 high mobility group AT-hook 1 117062
rno Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 171379
rno Loxl2 lysyl oxidase-like 2 290350 IEA,ISO,ISS
rno Hells helicase, lymphoid specific 294071
rno Fam172a family with sequence similarity 172, member A 294606
rno Mecom MDS1 and EVI1 complex locus 294924 ISO
rno Znfx1 zinc finger, NFX1-type containing 1 296384
rno Arid1a AT-rich interaction domain 1A 297867
rno Hdac1 histone deacetylase 1 297893
rno Pole3 DNA polymerase epsilon 3, accessory subunit 298098
rno Dicer1 dicer 1 ribonuclease III 299284
rno Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 302553
rno Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit 303547
rno Baz2a bromodomain adjacent to zinc finger domain, 2A 304601
rno Wdhd1 WD repeat and HMG-box DNA binding protein 1 305827
rno Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 307766
rno Rrp8 ribosomal RNA processing 8 308911
rno Sirt1 sirtuin 1 309757
rno Hp1bp3 heterochromatin protein 1, binding protein 3 313647 IBA,IEA,ISO,ISS
rno Nrde2 NRDE-2, necessary for RNA interference, domain containing 314381
rno Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 316732
rno Bahd1 bromo adjacent homology domain containing 1 362194
rno Mthfr methylenetetrahydrofolate reductase 362657
rno Mbd3 methyl-CpG binding domain protein 3 362834
rno Dnmt3a DNA methyltransferase 3 alpha 444984
rno Dnmt3b DNA methyltransferase 3 beta 444985
rno Suv39h1 suppressor of variegation 3-9 homolog 1 501653
rno Cenpv centromere protein V 501702
rno Mbd2 methyl-CpG binding domain protein 2 680172
rno Bend3 BEN domain containing 3 683923
rno Setdb1 SET domain bifurcated histone lysine methyltransferase 1 689883 IBA
rno Setd7 SET domain containing 7, histone lysine methyltransferase 689954 ISO
rno H3f3a H3.3 histone A 100361558
rno Setdb2 SET domain bifurcated histone lysine methyltransferase 2 100361710 IBA
rno Prdm16 PR/SET domain 16 100366024 ISO
gga HDAC1 histone deacetylase 1 373961
gga LOXL2 lysyl oxidase like 2 419533 ISS
gga HP1BP3 heterochromatin protein 1 binding protein 3 425543 IBA
gga FAM172A family with sequence similarity 172 member A 427109
dre dicer1 dicer 1, ribonuclease type III 324724
dre smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 334032
dre setdb2 SET domain bifurcated histone lysine methyltransferase 2 335153 IBA
dre fam172a family with sequence similarity 172 member A 393390
dre pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) 393774
dre setdb1a SET domain bifurcated histone lysine methyltransferase 1a 553292 IBA
dre hp1bp3 heterochromatin protein 1, binding protein 3 558102 IBA,IEA
dre loxl2a lysyl oxidase-like 2a 565508 ISS
dre bend3 BEN domain containing 3 565716
dre si:ch73-41e3.7 si:ch73-41e3.7 572312
dre setdb1b SET domain bifurcated histone lysine methyltransferase 1b 768131 IBA
dre loxl2b lysyl oxidase-like 2b 791144 ISS
dre nrde2 NRDE-2, necessary for RNA interference, domain containing 794348
dre rrp8 ribosomal RNA processing 8 797198
dre znfx1 zinc finger, NFX1-type containing 1 100536767
dme snf sans fille 31442
dme CG5877 uncharacterized protein 32455
dme Arp6 Actin-related protein 6 32514 ISS
dme Lam Lamin 33782
dme Gas41 Gas41 33973
dme r2d2 r2d2 34066
dme Su(var)205 Suppressor of variegation 205 34119
dme piwi P-element induced wimpy testis 34521
dme crol crooked legs 34592
dme nub nubbin 34669
dme vig vasa intronic gene 34885 IMP
dme Mcm10 Minichromosome maintenance 10 35390
dme CG8677 uncharacterized protein 35397
dme bin3 bicoid-interacting protein 3 35552
dme ADD1 ADD domain-containing protein 1 36278
dme fl(2)d female lethal d 36527
dme Su(var)2-HP2 Su(var)2-HP2 36621
dme Khc Kinesin heavy chain 36810
dme Lhr Lethal hybrid rescue 36957
dme Dcr-2 Dicer-2 36993
dme HPS4 Hermansky-Pudlak Syndrome 4 37009
dme Dp1 Dodeca-satellite-binding protein 1 37116
dme CG7137 uncharacterized protein 37204
dme Panx Panoramix 37434
dme Fmr1 Fmr1 37528
dme egg eggless 37962 IBA,IMP
dme Atf-2 Activating transcription factor-2 37978
dme blanks blanks 38620
dme upSET upSET 39551
dme stwl stonewall 39581 IMP
dme AGO2 Argonaute 2 39683
dme Su(var)3-3 Suppressor of variegation 3-3 40217 IMP
dme MTA1-like Metastasis associated 1-like 40693
dme gpp grappa 40793
dme FBXO11 F-box protein 11 41209
dme Su(var)3-9 Suppressor of variegation 3-9 41483 IMP
dme CG10038 uncharacterized protein 41495
dme Hsc70-4 Heat shock protein cognate 4 41840
dme Odj Oddjob 42145
dme CG6204 uncharacterized protein 42877
dme vig2 vig2 43016 IMP
dme XNP XNP 43080
dme Hnf4 Hepatocyte nuclear factor 4 44544
dme SuUR Suppressor of Under-Replication 45739
dme Tlk Tousled-like kinase 318206
dme Chrac-14 Chromatin accessibility complex 14kD protein 3772329
cel rrf-1 RNA-directed RNA polymerase 172523
cel ego-1 RNA-directed RNA polymerase 172524
cel rrf-2 RNA-directed RNA polymerase 173092
cel rrf-3 RNA-directed RNA polymerase 174315
cel znfx-1 NFX1-type zinc finger-containing protein 1 homolog 174463
cel nrde-2 Nuclear exosome regulator NRDE2 174589
cel wago-4 Argonaute protein wago-4 174932
cel T26A5.8 CBFD_NFYB_HMF domain-containing protein 175921
cel met-2 Histone-lysine N-methyltransferase met-2 176183 IBA
cel Y75B8A.31 FAM172 family protein homolog Y75B8A.31 176658
cel mrg-1 MRG domain-containing protein 176702
cel rrp-8 Ribosomal RNA-processing protein 8 176864
cel rde-1 Piwi domain-containing protein 179393
cfa HMGA1 high mobility group AT-hook 1 442946
sce MRC1 chromatin-modulating protein MRC1 850297
sce SGF29 Sgf29p 850347
sce ORC3 origin recognition complex subunit 3 850656
sce YCS4 condensin subunit YCS4 850977
sce MCM5 MCM DNA helicase complex subunit MCM5 850980
sce NNT1 S-adenosylmethionine-dependent methyltransferase 850991
sce NUP2 nucleoporin NUP2 851048
sce SIR3 chromatin-silencing protein SIR3 851163
sce FUN30 DNA-dependent ATPase FUN30 851214
sce NUP60 FG-nucleoporin NUP60 851263
sce ASF2 Asf2p 851330
sce NUP84 Nup84p 851441
sce SIR2 NAD-dependent histone deacetylase SIR2 851520
sce NSI1 Nsi1p 851590
sce FOB1 replication fork barrier binding protein FOB1 851688
sce DPB4 DNA polymerase epsilon noncatalytic subunit 851699
sce HST4 NAD-dependent histone deacetylase HST4 851772
sce SIR4 chromatin-silencing protein SIR4 851813
sce SUM1 Sum1p 851905
sce ESC2 Esc2p 851965
sce LRS4 Lrs4p 852049
sce DOT1 histone methyltransferase DOT1 852050
sce ADA2 chromatin-binding transcription regulator ADA2 852059
sce NUP170 Nup170p 852199
sce SAS3 histone acetyltransferase 852228
sce ORC2 origin recognition complex subunit 2 852352
sce POL30 proliferating cell nuclear antigen 852385
sce MCM7 mini-chromosome maintenance complex protein 7 852501
sce ISW1 chromatin-remodeling ATPase ISW1 852547
sce RIF1 DNA-binding protein RIF1 852578
sce DPB3 DNA polymerase epsilon noncatalytic subunit 852580
sce PAF1 Paf1p 852582
sce NUP145 nucleocytoplasmic transporter NUP145 852788
sce SGF73 deubiquitination module subunit SGF73 852814
sce PNC1 nicotinamidase 852846
sce SPT10 Spt10p 853315
sce ASF1 nucleosome assembly factor ASF1 853327
sce SCP160 Scp160p 853365
sce NET1 Net1p 853369
sce JHD2 histone demethylase 853583
sce ABF1 DNA-binding protein ABF1 853748
sce NUP120 Nup120p 853808
sce SPT23 Spt23p 853848
sce TOF2 Tof2p 853880
sce IRS4 Irs4p 853889
sce NUP133 Nup133p 853957
sce SIR1 Sir1p 853976
sce MSH2 mismatch repair ATPase MSH2 854063
sce HST1 histone deacetylase HST1 854086
sce HTZ1 histone H2AZ 854150
sce TOP1 DNA topoisomerase 1 854156
sce DIA2 DNA-binding SCF ubiquitin ligase subunit DIA2 854247
sce NPT1 nicotinate phosphoribosyltransferase 854384
sce ESA1 NuA4 histone acetyltransferase complex catalytic subunit ESA1 854418
sce ISW2 DNA translocase 854480
sce MCM10 Mcm10p 854656
sce MGA2 Mga2p 854851
sce ZDS2 Zds2p 854931
sce ORC1 origin recognition complex subunit 1 854937
sce NAT4 N-terminal L-serine N(alpha)-acetyltransferase NatD 855091
sce NAM7 ATP-dependent RNA helicase NAM7 855104
sce SAS2 histone acetyltransferase 855157
sce SPT21 Spt21p 855217
sce YKU70 ATP-dependent DNA helicase YKU70 855328
sce POL2 DNA polymerase epsilon catalytic subunit 855459
sce ORC5 origin recognition complex subunit 5 855460
sce RAP1 DNA-binding transcription factor RAP1 855505
sce RTT106 Rtt106p 855515
sce UBP10 ubiquitin-specific protease UBP10 855535
sce HST2 histone deacetylase HST2 856092
sce ORC4 origin recognition complex subunit 4 856291
sce DPB2 DNA polymerase epsilon noncatalytic subunit 856305
sce GIC1 Gic1p 856458
sce ORC6 origin recognition complex subunit 6 856518
sce SET1 histone methyltransferase SET1 856519
sce MCM3 MCM DNA helicase complex subunit MCM3 856680
sce DOT6 Dot6p 856822
spo ers1 RNA-silencing factor Ers1 2538690
spo hif2 Set3 complex subunit Hif2 2538701
spo set1 histone lysine methyltransferase Set1 2538762
spo sgf73 SAGA complex subunit Sgf73 2538769
spo raf1 Rik1-associated factor Raf1 2538848
spo hst2 Sir2 family histone deacetylase Hst2 2538868
spo dcr1 dicer 2538930
spo spf1 Set1C PHD Finger protein Spf1 2539023
spo fft2 putative protein Fft2 2539045
spo rik1 silencing protein Rik1 2539050
spo sdc1 Dpy-30 domain protein Sdc1 2539145
spo hrr1 helicase Hrr1 2539248
spo mug154 protein mug154 2539375 EXP
spo ago1 argonaute 2539403
spo raf2 Rik1-associated factor Raf2 2539420
spo cid12 poly(A) polymerase Cid12 2539423
spo epe1 Jmjc domain-containing protein Epe1 2539481
spo snd1 RNA-binding protein Snd1 2539488
spo mmi1 YTH family RNA-binding protein Mmi1 2539540
spo ash2 Ash2-trithorax family protein 2539667
spo mas5 putative DNAJ domain-containing protein Mas5 2539671
spo SPBC13E7.08c putative RNA polymerase II-associated Paf1 complex protein 2539726 EXP
spo pst1 Clr6 histone deacetylase complex subunit Pst1 2540018
spo chp2 chromodomain protein 2 2540047
spo SPBC336.05c putative S-adenosylmethionine-dependent methyltransferase 2540251
spo clr6 class 1 histone deacetylase Clr6 2540368
spo dnt1 nucleolar protein Dnt1 2540499
spo SPBC29A10.09c putative CAF1 family ribonuclease 2540515
spo pcf1 CAF assembly factor (CAF-1) complex large subunit Pcf1 2540554
spo clr1 cryptic loci regulator Clr1 2540558
spo cdc20 DNA polymerase epsilon catalytic subunit Pol2 2540627
spo tas3 RITS complex subunit 3 2540735
spo swd2 Set1C complex subunit Swd2.1 2540788
spo clr3 class 2 histone deacetylase Clr3 2540821
spo clr4 histone H3 methyltransferase Clr4 2540825
spo SPBC582.04c hypothetical protein 2540902
spo swd3 WD repeat protein Swd3 2540929
spo rtt109 RTT109 family histone lysine acetyltransferase 2540945
spo dpb4 DNA polymerase epsilon subunit Dpb4 2540966
spo SPBC725.08 putative C2H2-type zinc finger domain-containing protein 2541143
spo lid2 Lid2 complex putative histone demethylase subunit Lid2 2541299
spo mit1 SHREC complex subunit Mit1 2541336
spo stc1 LIM-like protein Stc1 2541372
spo rpb2 RNA polymerase II complex subunit Rpb2 2541446
spo fft3 putative protein Fft3 2541531
spo man1 putative LEM domain-containing protein Man1 2541585
spo swi6 chromodomain protein Swi6 2541633
spo swd1 Set1C complex subunit Swd1 2541776
spo snt1 Set3 complex subunit Snt1 2541792
spo rbx1 RING-box protein 1 2541897
spo set3 histone lysine methyltransferase Set3 2541899
spo fft1 putative protein Fft1 2541983
spo mst2 histone acetyltransferase Mst2 2542170
spo rdp1 RNA-directed RNA polymerase Rdp1 2542198
spo chp1 chromodomain protein Chp1 2542239
spo hst4 Sir2 family histone deacetylase Hst4 2542366
spo lem2 LEM domain protein Heh1/Lem2 2542544 EXP
spo clr2 chromatin silencing protein Clr2 2542596
spo arb1 argonaute-binding protein 1 2542862
spo arb2 argonaute-binding protein 1 2542879
spo pcu4 cullin 4 2543116
spo red1 RNA elimination defective protein red1 2543254
spo hsp90 Hsp90 chaperone 2543539
spo rrp6 putative exosome 3'-5' exoribonuclease subunit Rrp6 2543630
spo hos2 class 1 histone deacetylase Hos2 2543643
spo sir2 Sir2 family histone deacetylase Sir2 3361342
spo shg1 Set1C complex subunit Shg1 3361506
spo SPCC16C4.22 histone-like transcription factor family (CBF/NF-Y) 9406966


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