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Home:
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Recent update
[2010.03.05] "Tool" tab is renamed "Draw" tab.
[2010.02.10] The function to making unified coexpressed gene list from multiple genes were previously provided as a part of [Tool > NetworkDrawer]. This function is newly supplied as [Search > CoexSearch].
[more]
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Aim of COXPRESdb
COXPRESdb provides co-regulated gene relationships to estimate gene functions.
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Target species
- Hsa (Homo sapiens) (e.g. gene page for Hsa ZAP70)
- Mmu (Mus musculus) (e.g. gene page for Mmu Ldlrap1)
- Rno (Rattus norvegicus) (e.g. gene page for Rno Top2a)
- Gga (Gallus gallus) (e.g. coexpressed gene list for Gga FDFT1)
- Dre (Danio rerio) (e.g. coexpressed gene list for Dre atp1b1a)
- Dme (Drosophila melanogaster) (e.g. coexpressed gene list for Dma Act87E)
- Cel (Caenorhabditis elegans) (e.g. coexpressed gene list for Cel sod-1)
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Basic contents of COXPRESdb
- Co-expressed genes
- Source of gene expression data; publicly available GeneChip data stored at NCBI GEO or EBI ArrayExpress.
| Species |
Version |
Platform |
Genes |
Experiments |
GeneChips |
Details |
| Hsa |
c3.1 |
GPL570 |
19777 genes |
123 experiments |
4401 GeneChips |
[more] |
| Mmu |
c2.1 |
GPL1261 |
21036 genes |
154 experiments |
2226 GeneChips |
[more] |
| Rno |
c2.0 |
GPL1355 |
13751 genes |
164 experiments |
3526 GeneChips |
| Gga |
c1.0 |
GPL3213 |
13757 genes |
22 experiments |
352 GeneChips |
| Dre |
c1.0 |
GPL1319 |
10112 genes |
41 experiments |
590 GeneChips |
| Dme |
c1.0 |
GPL1322 |
12626 genes |
52 experiments |
1022 GeneChips |
| Cel |
c1.0 |
GPL200 |
17256 genes |
35 experiments |
514 GeneChips |
- Calculation procedure; Mutual rank of Pearson's correlation coefficients. [more]
- Examples;
| As gene lists |
As gene networks |
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- Tissue-specific expression patterns
- Data source;
- Examples;
| Human |
Mouse |
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Contents on COXPRESdb are licensed under a Creative Commons Attribution 2.1 License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Downloadable data, results of tools, figures and web snapshots can be used for publication, presentation and any other purposes. In such cases, to avoid misunderstanding, we ask you to add version number of COXPRESdb or each coexpression data.
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Version numbering (2008.10.31)
COXPERSdb has two types of versions: version for COXPRESdb and version for coexpression data.
- To prevent confusions between the two types of versions, we added extra "c" for coexpression version.
- To ensure consistency with COXPRESdb version, coexpression versions were renamed as follows;
- Human;
- (old) → (new)
- ver.1 → ver.c1.0
- ver.2 → ver.c2.0
- ver.4 → ver.c3.0
- ver.6 → ver.c3.1 (current version!)
- Mouse;
- ver.1 → ver.c1.0
- ver.2 → ver.c2.0
- ver.3 → ver.c2.1 (current version!)
- Rat;
- ver.2 → ver.c1.0
- ver.4 → ver.c1.1
Please check [Logs > History of data version].
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