GO:0006283 transcription-coupled nucleotide-excision repair

73 hsa genes in this database.
10 mmu genes in this database.
10 rno genes in this database.
1 gga genes in this database.
5 dre genes in this database.
1 dme genes in this database.
5 cel genes in this database.
11 sce genes in this database.
7 spo genes in this database.

[QuickGO]

term: transcription-coupled nucleotide-excision repair
goid: GO:0006283

Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
hsa CCNH cyclin H 902 TAS
hsa CDK7 cyclin dependent kinase 7 1022 TAS
hsa ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 1161 IBA,IDA,IMP,TAS
hsa DDB1 damage specific DNA binding protein 1 1642 TAS
hsa EP300 E1A binding protein p300 2033 TAS
hsa ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2067 TAS
hsa ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit 2068 IDA,TAS
hsa ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit 2071 IDA,TAS
hsa ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2072 TAS
hsa ERCC5 ERCC excision repair 5, endonuclease 2073 IMP,TAS
hsa ERCC6 ERCC excision repair 6, chromatin remodeling factor 2074 IBA,IMP,TAS
hsa GPS1 G protein pathway suppressor 1 2873 TAS
hsa GTF2H1 general transcription factor IIH subunit 1 2965 TAS
hsa GTF2H2 general transcription factor IIH subunit 2 2966 TAS
hsa GTF2H3 general transcription factor IIH subunit 3 2967 TAS
hsa GTF2H4 general transcription factor IIH subunit 4 2968 TAS
hsa HMGN1 high mobility group nucleosome binding domain 1 3150 TAS
hsa LIG1 DNA ligase 1 3978 TAS
hsa LIG3 DNA ligase 3 3980 TAS
hsa MNAT1 MNAT1 component of CDK activating kinase 4331 TAS
hsa PCNA proliferating cell nuclear antigen 5111 TAS
hsa POLD1 DNA polymerase delta 1, catalytic subunit 5424 TAS
hsa POLD2 DNA polymerase delta 2, accessory subunit 5425 TAS
hsa POLR2A RNA polymerase II subunit A 5430 TAS
hsa POLR2B RNA polymerase II subunit B 5431 TAS
hsa POLR2C RNA polymerase II subunit C 5432 TAS
hsa POLR2D RNA polymerase II subunit D 5433 TAS
hsa POLR2E RNA polymerase II, I and III subunit E 5434 TAS
hsa POLR2F RNA polymerase II, I and III subunit F 5435 TAS
hsa POLR2G RNA polymerase II subunit G 5436 TAS
hsa POLR2H RNA polymerase II, I and III subunit H 5437 TAS
hsa POLR2I RNA polymerase II subunit I 5438 IBA,TAS
hsa POLR2J RNA polymerase II subunit J 5439 TAS
hsa POLR2K RNA polymerase II, I and III subunit K 5440 TAS
hsa POLR2L RNA polymerase II, I and III subunit L 5441 TAS
hsa RFC1 replication factor C subunit 1 5981 TAS
hsa RFC2 replication factor C subunit 2 5982 TAS
hsa RFC3 replication factor C subunit 3 5983 TAS
hsa RFC4 replication factor C subunit 4 5984 TAS
hsa RFC5 replication factor C subunit 5 5985 TAS
hsa RPA1 replication protein A1 6117 TAS
hsa RPA2 replication protein A2 6118 TAS
hsa RPA3 replication protein A3 6119 TAS
hsa RPS27A ribosomal protein S27a 6233 TAS
hsa TCEA1 transcription elongation factor A1 6917 TAS
hsa UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 7311 TAS
hsa UBB ubiquitin B 7314 TAS
hsa UBC ubiquitin C 7316 TAS
hsa XPA XPA, DNA damage recognition and repair factor 7507 TAS
hsa XRCC1 X-ray repair cross complementing 1 7515 TAS
hsa USP7 ubiquitin specific peptidase 7 7874 IMP,TAS
hsa CUL4B cullin 4B 8450 TAS
hsa CUL4A cullin 4A 8451 TAS
hsa COPS3 COP9 signalosome subunit 3 8533 TAS
hsa COPS2 COP9 signalosome subunit 2 9318 TAS
hsa AQR aquarius intron-binding spliceosomal factor 9716 TAS
hsa RBX1 ring-box 1 9978 TAS
hsa PPIE peptidylprolyl isomerase E 10450 TAS
hsa POLD3 DNA polymerase delta 3, accessory subunit 10714 TAS
hsa COPS8 COP9 signalosome subunit 8 10920 TAS
hsa COPS6 COP9 signalosome subunit 6 10980 TAS
hsa COPS5 COP9 signalosome subunit 5 10987 TAS
hsa PRPF19 pre-mRNA processing factor 19 27339 TAS
hsa COPS7A COP9 signalosome subunit 7A 50813 TAS
hsa COPS4 COP9 signalosome subunit 4 51138 TAS
hsa POLK DNA polymerase kappa 51426 TAS
hsa XAB2 XPA binding protein 2 56949 IDA,TAS
hsa ISY1 ISY1 splicing factor homolog 57461 TAS
hsa UVSSA UV stimulated scaffold protein A 57654 IBA,IMP,TAS
hsa POLD4 DNA polymerase delta 4, accessory subunit 57804 TAS
hsa COPS7B COP9 signalosome subunit 7B 64708 TAS
hsa ZNF830 zinc finger protein 830 91603 TAS
hsa GTF2H5 general transcription factor IIH subunit 5 404672 TAS
mmu Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 13871 ISO
mmu Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 13872 ISO
mmu Hmgn1 high mobility group nucleosomal binding domain 1 15312 IMP
mmu Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 22592 ISO
mmu Xab2 XPA binding protein 2 67439 ISO
mmu Polr2i polymerase (RNA) II (DNA directed) polypeptide I 69920 IBA
mmu Uvssa UV stimulated scaffold protein A 71101 IBA,ISO
mmu Ercc8 excision repaiross-complementing rodent repair deficiency, complementation group 8 71991 IBA,ISO
mmu Usp7 ubiquitin specific peptidase 7 252870 ISO
mmu Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 319955 IBA,IMP,ISO
rno Xab2 XPA binding protein 2 245976 ISO,ISS
rno Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit 291703 ISO
rno Polr2i RNA polymerase II subunit I 292778 IBA
rno Ercc5 ERCC excision repair 5, endonuclease 301382 ISO
rno Ercc6 ERCC excision repair 6, chromatin remodeling factor 306274 IBA,IMP,ISO,ISO
rno Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit 308415 ISO
rno Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 310071 IBA,ISO,ISO
rno Uvssa UV-stimulated scaffold protein A 314061 IBA,IEA,ISO,ISS
rno Usp7 ubiquitin specific peptidase 7 360471 IEA,ISO,ISS
rno Hmgn1 high mobility group nucleosome binding domain 1 360704 ISO
gga UVSSA UV stimulated scaffold protein A 422903 IBA,ISS
dre ercc3 excision repair cross-complementation group 3 324323 ISS
dre uvssa UV-stimulated scaffold protein A 402864 IBA,ISS
dre ercc8 excision repair cross-complementation group 8 449811 IBA,IEA
dre polr2i RNA polymerase II subunit I 449992 IBA
dre ercc6 excision repair cross-complementation group 6 560477 IBA
dme RpII15 RNA polymerase II 15kD subunit 41741 IBA
cel csa-1 Cockayne Syndrome complementation group A homolog 174474 IBA,IEA
cel uvs-1 UV-stimulated scaffold protein A homolog 179158 IBA,IMP
cel rpb-9 DNA-directed RNA polymerase II subunit RPB9 179178 IBA
cel F53H4.6 Helicase C-terminal domain-containing protein 181672 IBA
cel csb-1 uncharacterized protein 181674 IMP
sce SEN1 putative DNA/RNA helicase SEN1 851150 IGI
sce SUB2 ATP-dependent RNA helicase SUB2 851475 IMP
sce RAD28 Rad28p 851594 IBA,IEA
sce HPR1 Hpr1p 851716 IMP
sce SAC3 Sac3p 851737 IMP
sce YRA1 RNA-binding protein YRA1 851988 IMP
sce RPB9 DNA-directed RNA polymerase II core subunit RPB9 852810 IBA,IGI
sce RAD26 DNA-dependent ATPase RAD26 853492 IBA,IGI,IMP,IMP
sce DEF1 DNA damage-responsive RNA polymerase-degradation factor DEF1 853811 IGI
sce THP1 Thp1p 854082 IMP
sce THO2 Tho2p 855583 IMP
spo rhp26 SNF2 family helicase Rhp26 2539473 IBA,IMP
spo ckn1 DNA repair ERCC8 family protein ckn1 2540861 IBA,IMP
spo def1 putative RNAPII degradation factor Def1 2540930 ISO
spo rpb9 DNA-directed RNA polymerase II complex subunit Rpb9 2541470 IBA
spo ptr8 transcription factor TFIIH complex ERCC-3 subunit 2542174 ISS
spo ddb1 damaged DNA-binding protein Ddb1 2542207 IMP
spo pcu4 cullin 4 2543116 IMP


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