Orthologous genes in OrthoFinder**

Species Gene Description
 dre-u.3   ythdc1   YTH domain containing 1 
 dre-r.3   ythdc1   YTH domain containing 1 
 hsa-u.4   YTHDC1   YTH domain containing 1 
 mmu-u.4   Ythdc1   YTH domain containing 1 
 rno-u.3   Ythdc1   YTH domain containing 1 
 gga-u.3   YTHDC1   YTH domain containing 1 
 mcc-u.3   YTHDC1   YTH domain containing 1 
 cfa-u.3   YTHDC1   YTH domain containing 1 
 dme-u.3   Ythdc1   YTH domain containing 1 

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Top 50 coexpressed genes to ythdc1 (dre-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 dre3040   Spliceosome  8 139 7.33
 dre4330   Notch signaling pathway  2 78 -
 dre3015   mRNA surveillance pathway  2 99 -
 dre4520   Adherens junction  1 118 -
 dre4142   Lysosome  1 184 -

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dre:ythdc1 (YTH domain containing 1) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

dre-u.3
for
ythdc1
dre-r.3
for
ythdc1
hsa-u.4
for
YTHDC1
mmu-u.4
for
Ythdc1
rno-u.3
for
Ythdc1
gga-u.3
for
YTHDC1
mcc-u.3
for
YTHDC1
cfa-u.3
for
YTHDC1
dme-u.3
for
Ythdc1
1 rbm33a RNA binding motif protein 33a 100149667 9.9 5.1
 5.2
 3.7
 3.1
 5.5
 3.0
 0.8
2 zc3h18 zinc finger CCCH-type containing 18 555770 8.4 4.4
2.0
 2.2
 1.3
 2.3
 0.3
 6.3
3 smg7 SMG7 nonsense mediated mRNA decay factor 565575 8.2 4.3
 1.8
 3.9
 2.6
 1.0
 1.0
 1.8
4 hnrnpul1l heterogeneous nuclear ribonucleoprotein U-like 1 like 100330645 7.6 4.0
 6.9
2.7
 4.5
4.5
 5.9
5.0
 3.1
2.3
 3.5
1.6
 4.9
2.9
 2.6
5 tdrd3 tudor domain containing 3 402828 7.4 3.8
 0.7
 0.0
 3.5
 0.8
 2.0
 3.4
 0.9
6 zfr zinc finger RNA binding protein 321659 7.2 3.8
 3.5
 3.6
0.0
 5.5
0.4
 4.9
0.3
 2.0
 3.5
 5.3
7 itsn1 intersectin 1 (SH3 domain protein) 368504 7.2 3.7
 2.4
1.1
 2.4
0.2
 2.3
0.3
 2.8
2.6
 3.4
0.9
 4.2
0.1
 1.5
8 slc4a1ap solute carrier family 4 member 1 adaptor protein 562351 7.0 3.7
2.7
 1.8
 1.1
 3.0
 2.4
 2.2
9 wu:fi46h04 wu:fi46h04 100329282 7.0 3.7
 0.5
 0.6
 2.0
 2.7
 0.5
 0.0
10 ctdp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 442930 7.0 3.7
 1.7
 2.4
 2.3
 3.4
 2.3
 0.7
 1.4
11 traf3ip1 TNF receptor-associated factor 3 interacting protein 1 393572 6.9 3.6
 1.5
 2.3
 1.0
 1.0
 -0.1
 2.5
 -1.1
12 zc3h6 zinc finger CCCH-type containing 6 559312 6.7 3.5
 2.8
1.9
 2.2
0.5
 2.1
2.0
 3.6
 3.4
1.9
 2.7
1.9
 4.3
13 snrnp70 small nuclear ribonucleoprotein 70 (U1) 445398 6.7 3.5
 4.1
 3.2
 2.9
3.1
 2.2
 6.6
14 supt6h SPT6 homolog, histone chaperone and transcription elongation factor 337866 6.5 3.4
 4.5
 4.3
 4.2
 0.8
 2.8
 1.2
 2.5
15 afdna afadin, adherens junction formation factor a 558359 6.4 3.4
 2.6
 2.6
 1.8
 1.7
 2.1
 0.9
 1.0
16 nap1l1 nucleosome assembly protein 1-like 1 368260 6.3 3.3
 2.5
2.0
 2.0
1.2
 2.3
2.1
 1.5
1.2
 2.7
 1.7
1.4
 1.1
0.1
17 znf318 zinc finger protein 318 100330539 6.3 3.3
 0.8
 -0.4
 2.5
 2.6
 0.1
4.2
18 cdc73 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 393319 6.2 3.3
 3.5
 3.0
 4.6
 3.3
 2.6
 3.4
 3.5
-0.7
19 cdk5rap2 CDK5 regulatory subunit associated protein 2 334460 6.1 3.2
 1.9
 0.6
 0.1
 3.1
 1.5
 -0.8
 0.3
20 dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 336645 6.1 3.2
 6.3
4.6
 6.0
2.5
 4.7
3.7
 2.8
2.5
 5.4
3.6
 2.8
2.2
 3.7
2.5
21 arid4b AT-rich interaction domain 4B 100537923 6.1 3.2
 7.7
5.7
 6.5
5.8
 9.3
4.5
 6.3
4.8
 4.8
3.6
 5.2
4.7
 4.0
22 fnbp4 formin binding protein 4 403074 6.0 3.2
 5.8
 4.5
 4.7
 2.7
 5.4
 3.4
23 prpf4ba pre-mRNA processing factor 4Ba 393182 6.0 3.1
 5.7
 6.7
 6.7
 5.9
 6.0
 3.9
 1.7
24 smarcc1a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a 403020 6.0 3.1
 3.0
2.0
 1.0
0.3
 1.9
1.6
 3.3
3.0
 2.6
0.5
 0.8
0.7
 4.9
25 rest RE1-silencing transcription factor 564772 5.9 3.1
 4.9
 0.6
 0.6
 2.8
 1.3
 2.4
26 phf14 PHD finger protein 14 555505 5.9 3.1
 2.6
 3.2
 1.5
 1.9
 2.2
 4.6
 3.8
27 dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 393850 5.9 3.1
 6.3
4.6
 6.0
2.5
 4.7
3.7
 2.8
2.5
 5.4
3.6
 2.8
2.2
 3.7
2.5
28 anp32a acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 335907 5.9 3.1
 4.3
2.6
 4.2
3.0
 4.6
3.6
 4.9
2.3
 4.7
3.1
 2.9
1.9
 1.2
29 ddx42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 503932 5.8 3.1
 6.0
 4.7
 4.0
 2.5
 4.6
 3.4
 2.1
30 mfap1 microfibril associated protein 1 393992 5.8 3.0
 5.4
 4.6
2.2
 5.2
 3.8
 3.5
 5.2
 3.0
31 dis3l2 DIS3 like 3'-5' exoribonuclease 2 566106 5.8 3.0
 0.7
 -0.4
 -0.0
 -0.2
 0.7
 -0.7
 -1.6
32 cir1 corepressor interacting with RBPJ, CIR1 553421 5.7 3.0
 6.2
 3.6
 4.4
 1.1
 2.7
 3.7
 0.9
33 paxbp1 PAX3 and PAX7 binding protein 1 563266 5.7 3.0
 4.0
-0.7
 6.9
 5.3
3.7
 2.5
1.3
 4.6
0.7
 3.9
 4.4
34 ap3d1 adaptor related protein complex 3 subunit delta 1 563359 5.7 3.0
 0.7
 1.9
 1.3
 2.3
 0.8
 0.8
 3.2
35 rbm25b RNA binding motif protein 25b 327336 5.7 3.0
 8.9
 8.0
 4.4
 5.7
 4.9
 6.7
 4.4
36 LOC565999 protein SON 565999 5.6 3.0
 6.5
 5.6
 6.3
 3.4
 4.5
 2.0
 1.0
37 srrm2 serine/arginine repetitive matrix 2 553531 5.6 3.0
 2.6
 3.3
1.7
 1.7
4.9
38 znf609a zinc finger protein 609a 793767 5.5 2.9
 2.3
1.3
 0.9
-0.0
 2.5
0.5
 1.2
0.9
 2.0
1.9
 1.2
0.8
 2.1
39 rbm27 RNA binding motif protein 27 100332262 5.5 2.9
 6.3
4.8
 5.8
5.4
 7.0
4.9
 4.8
2.1
 3.1
1.0
 4.5
4.4
 2.4
40 slu7 SLU7 homolog, splicing factor 492495 5.5 2.9
 6.9
 4.3
 4.4
 5.0
 3.3
 5.1
 0.9
41 crebrf creb3 regulatory factor 100149876 5.4 2.8
 3.6
 1.2
 1.1
 5.9
 4.0
 3.7
 -0.6
42 ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 334283 5.4 2.8
 2.6
 2.1
 1.7
1.9
 1.9
 1.3
43 prrc2c proline-rich coiled-coil 2C 407633 5.4 2.8
 5.7
 2.3
 1.4
5.3
 3.6
44 snw1 SNW domain containing 1 321852 5.3 2.8
 6.6
 3.6
 4.5
 2.8
 5.3
 4.7
 3.8
45 l3mbtl1b L3MBTL histone methyl-lysine binding protein 1b 559572 5.3 2.8
 1.8
 1.7
 0.4
 0.5
-0.7
 3.2
-0.6
 2.1
 0.8
46 zc3h4 zinc finger CCCH-type containing 4 557823 5.2 2.7
 3.4
 2.4
 2.8
 3.7
 2.5
 2.0
47 metap2b methionyl aminopeptidase 2b 323452 5.2 2.7
 5.0
 2.8
 3.8
 -0.4
 3.6
 2.2
 -1.4
48 smg6 SMG6 nonsense mediated mRNA decay factor 100334020 5.2 2.7
1.0
 2.1
 4.7
 2.3
 1.5
 -0.8
49 si:ch211-13c6.2 si:ch211-13c6.2 100000125 5.2 2.7






50 ppp1r9ala protein phosphatase 1 regulatory subunit 9A-like A 571989 5.2 2.7


2.5


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