Orthologous genes in OrthoFinder**

Species Gene Description
 dre-u.3   foxd1   forkhead box D1 
 dre-r.3   foxd1   forkhead box D1 
 dre-u.3   foxg1d   forkhead box G1d 
 hsa-u.4   FOXI3   forkhead box I3 
 gga-u.3   FOXI3   forkhead box I3 
 mcc-u.3   FOXG1   forkhead box G1 
 cfa-u.3   FOXL2   forkhead box L2 
 cfa-u.3   FOXS1   forkhead box S1 
 cel-u.3   fkh-10   Fork-head domain-containing protein 
 cel-u.3   lin-31   Protein lin-31 
 cel-u.3   pes-1   Fork-head domain-containing protein 
 sce-u.3   HCM1   Hcm1p 
 sce-u.3   FKH2   forkhead family transcription factor FKH2 
 sce-u.3   FKH1   forkhead family transcription factor FKH1 

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Top 50 coexpressed genes to foxd1 (dre-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 dre220   Arginine biosynthesis  1 31 -
 dre250   Alanine, aspartate and glutamate metabolism  1 49 -
 dre4218   Cellular senescence  2 200 -
 dre4310   Wnt signaling pathway  3 220 -
 dre4010   MAPK signaling pathway  2 409 -

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dre:foxd1 (forkhead box D1) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

dre-u.3
for
foxd1
dre-r.3
for
foxd1
dre-u.3
for
foxg1d
hsa-u.4
for
FOXI3
gga-u.3
for
FOXI3
mcc-u.3
for
FOXG1
cfa-u.3
for
FOXL2
cfa-u.3
for
FOXS1
cel-u.3
for
fkh-10
cel-u.3
for
lin-31
cel-u.3
for
pes-1
sce-u.3
for
HCM1
sce-u.3
for
FKH2
sce-u.3
for
FKH1
1 pou3f3a POU class 3 homeobox 3a 30386 5.3 2.8
 4.2
2.8
 2.3
2.1
 3.4
1.9
 3.6
2.1
 2.5
1.4
 -0.4
-0.6
 0.8
-0.2
 3.4
0.9
 0.5
0.3


2 shisa3 shisa family member 3 791180 5.2 2.7
 3.0
 0.5
 0.3
-0.1
 0.6





3 hoxa2b homeobox A2b 30325 5.1 2.7
 0.9
-0.1
 0.4
-0.6
 0.3
-0.5
 0.3
-1.4
 -0.1
 1.0





4 foxg1a forkhead box G1a 30274 5.0 2.6
 4.7
4.4
 3.3
3.1
 2.2
1.6
 -0.5
-0.9
 3.8
3.3
 1.8
1.6
 2.1
0.6
 1.7
0.8
 3.7
1.8
 1.0
0.5
 3.9
1.0
 3.9
0.5
5 dmrta2 DMRT-like family A2 474350 5.0 2.6
 2.1
 2.5
 0.9
 3.0

1.2
 -0.2
 1.5


6 gsx2 GS homeobox 2 561076 5.0 2.6
 2.8
2.7










7 six6a SIX homeobox 6a 394080 5.0 2.6
 6.0
3.9
 2.8
2.1
 1.1
0.2
 2.1

1.9
 -0.4
 -0.9


8 nr2e1 nuclear receptor subfamily 2, group E, member 1 445214 4.9 2.6
 4.6
4.3
 2.9
0.1
 1.5
1.1
 1.7
1.5
 1.3
0.8
 3.4
0.6
 2.4
1.3
 -0.0
-0.2
 0.8
0.5


9 foxd2 forkhead box D2 30525 4.9 2.6
 4.7
4.4
 3.3
3.1
 2.2
1.6
 -0.5
-0.9
 3.8
3.3
 1.8
1.6
 2.1
0.6
 1.7
0.8
 3.7
1.8
 1.0
0.5
 3.9
1.0
 3.9
0.5
10 foxd7 forkhead box D7 100037333 4.9 2.6
 4.7
4.4
 3.3
3.1
 2.2
1.6
 -0.5
-0.9
 3.8
3.3
 1.8
1.6
 2.1
0.6
 1.7
0.8
 3.7
1.8
 1.0
0.5
 3.9
1.0
 3.9
0.5
11 sox3 SRY-box transcription factor 3 30529 4.8 2.6
 2.2
2.1
 5.2
3.0
 2.5
1.3
 5.6
4.1
 1.6
0.7
 1.7
1.5
 2.0
1.6
 1.8
1.6
 0.2
0.1
 0.7
 0.9
 1.1
12 vsx2 visual system homeobox 2 796163 4.8 2.5
 6.3
5.0
 2.7
 2.3
0.2


3.0
 -1.4
 -0.3


13 cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 554036 4.7 2.5
 2.5
0.6
 0.1
 0.5
 0.0
 1.4
 0.6





14 nr2f1b nuclear receptor subfamily 2, group F, member 1b 393564 4.7 2.5
 4.6
4.3
 2.9
0.1
 1.5
1.1
 1.7
1.5
 1.3
0.8
 3.4
0.6
 2.4
1.3
 -0.0
-0.2
 0.8
0.5


15 irx3a iroquois homeobox 3a 30520 4.6 2.4
 1.6
-0.0
 0.5
 1.6
 0.3
 -0.3
 2.1





16 trabd2a TraB domain containing 2A 564021 4.5 2.4
 1.7
-0.2
 -0.2
 -0.5
0.8
0.2
 0.2
-0.2
 -0.6
 -1.9
 0.3


17 skida1 SKI/DACH domain containing 1 100003232 4.4 2.3
 1.3
 1.6
 -1.3
 0.6







18 six2a SIX homeobox 2a 83415 4.4 2.3
 1.9
1.0
 1.3
1.0
 0.5
0.4
 1.2
-0.3
 2.6
-0.0
 0.2
-0.4
 0.6
 -0.0
 0.9


19 ass1 argininosuccinate synthase 1 447864 4.4 2.3
 1.1
 0.8
 -0.6
 -1.5
 -0.4
 -0.3


0.2
 0.2
 0.6
20 prox2 prospero homeobox 2 100003863 4.3 2.3
 3.0
-0.9
 -0.2

1.5
 -0.6
 -0.0


21 nkx3-2 NK3 homeobox 2 337865 4.3 2.3
 0.8
-0.4
1.1
0.3
 -0.1





22 shha sonic hedgehog signaling molecule a 30269 4.3 2.3
 1.4
0.3
 -0.7
 0.3
-0.7
 -0.4
 0.3
0.2
 1.8
-0.2





23 ascl1a achaete-scute family bHLH transcription factor 1a 30466 4.3 2.3
 5.0
3.3
 1.1
0.6
 0.5
0.1
 3.4
0.3

-0.3
 1.7
 2.6


24 bnc1 basonuclin 1 568786 4.3 2.2
 1.0
-0.4
 1.9
1.3
 0.9
-0.5
 2.8
-0.3
 0.8
0.3
 -0.1
-1.7
 -0.2
 1.8
 -1.1


25 six3a SIX homeobox 3a 30635 4.2 2.2
 6.0
3.9
 2.8
2.1
 1.1
0.2
 2.1

1.9
 -0.4
 -0.9


26 myca MYC proto-oncogene, bHLH transcription factor a 30686 4.1 2.2
 1.8
0.4
 -1.3
 -0.5
 -1.2
 0.7
 0.5





27 vax1 ventral anterior homeobox 1 373870 4.1 2.2
 4.9




0.9
0.2
 1.0
-2.4
 1.2
0.1
 6.2
 1.0
 1.5
28 six6b SIX homeobox 6b 553611 4.0 2.1
 6.0
3.9
 2.8
2.1
 1.1
0.2
 2.1

1.9
 -0.4
 -0.9


29 emx2 empty spiracles homeobox 2 30537 4.0 2.1
 2.1
0.5
 2.7
 0.0
-0.2
 3.2
2.7
 0.6
 -0.7
 3.0
 -0.1
 -1.0


30 pdgfaa platelet-derived growth factor alpha polypeptide a 378480 4.0 2.1
 1.4
1.2
 0.5
-0.1
 -0.5
-0.6
 0.1
-0.6
 1.4
1.0
 3.9
3.3





31 vasna vasorin a 553185 4.0 2.1
 0.5
-0.3
 -0.7
 -1.1
 -1.0
 0.3
 1.2





32 sost sclerostin 100000500 4.0 2.1
 2.0
0.9
1.2
 -0.8





33 fezf1 FEZ family zinc finger 1 558801 4.0 2.1
 3.6
2.8
 4.0
3.4
 1.3
 7.6







34 nkx2.4b NK2 homeobox 4b 58112 3.9 2.1
 2.2
2.2
 2.6
 1.2
 4.4

3.2
 -0.3
 0.4


35 twist1b twist family bHLH transcription factor 1b 550518 3.9 2.1
 2.9
1.1
 1.2
0.4
 0.7
-0.4
 -0.0
-0.6
 1.0
-1.4
 0.3
-0.3
 1.8
 1.0
 -0.4


36 pax1a paired box 1a 564359 3.9 2.1
 1.1
0.8
 1.3
 0.8


-0.7
 0.2
 0.5


37 apcdd1l adenomatosis polyposis coli down-regulated 1-like 100001408 3.9 2.1
 1.3
-0.0








38 lmx1bb LIM homeobox transcription factor 1, beta b 554360 3.9 2.1
 1.2
1.1
 3.5
 1.6
0.5
0.8
 0.7
 1.9
 2.0
 0.0


39 irx5a iroquois homeobox 5a 573346 3.9 2.0
 2.3
 1.1
 0.6
 -0.9
 0.7
 -0.5





40 pax1b paired box 1b 572108 3.8 2.0
 1.1
0.8
 1.3
 0.8


-0.7
 0.2
 0.5


41 nkx2.1 NK2 homeobox 1 81883 3.8 2.0
 2.2
2.2
 2.6
 1.2
 4.4

3.2
 -0.3
 0.4


42 tfap4 transcription factor AP-4 (activating enhancer binding protein 4) 100318080 3.8 2.0
 0.2
 -0.5
 0.4
 -0.6
 1.4
 -0.8
 -1.0
 2.4
 -0.1


43 nfatc4 nuclear factor of activated T cells 4 561682 3.8 2.0











44 hmx4 H6 family homeobox 4 751654 3.8 2.0
 6.1
1.5








45 cpsf6 cleavage and polyadenylation specific factor 6 327069 3.8 2.0
 0.7
 -0.6
 0.3
 -0.3
 0.3
 0.5





46 si:ch211-286o17.1 si:ch211-286o17.1 100332904 3.8 2.0











47 dhx32b DEAH (Asp-Glu-Ala-His) box polypeptide 32b 558937 3.8 2.0
 4.4
-0.4
 0.5
0.1
 0.8
0.4
 0.7
0.6
 0.8
0.6
 -0.1
-0.2
 0.1
-0.0
 -0.1
-0.3
 -0.2
-0.6
 0.7
0.7
 1.8
1.8
 1.2
0.6
48 her9 hairy-related 9 140613 3.7 2.0
 0.3
-0.0
 0.3
-0.3
 0.1
-0.5
 0.3
-0.3
 -0.0
-1.0
 2.9
2.2
 0.4
 1.0
 -1.0


49 cthrc1a collagen triple helix repeat containing 1a 445308 3.7 2.0
 1.3
-0.3
 0.1
 0.7
 -0.9
 0.1
 1.8





50 pax9 paired box 9 30558 3.7 2.0
 1.1
0.8
 1.3
 0.8


-0.7
 0.2
 0.5


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