Orthologous genes in OrthoFinder**

Species Gene Description
 gga-u.3   LMX1B   LIM homeobox transcription factor 1 beta 
 gga-r.3   LMX1B   LIM homeobox transcription factor 1 beta 
 gga-m.5   LMX1B   LIM homeobox transcription factor 1 beta 
 gga-u.3   LMX1A   LIM homeobox transcription factor 1, alpha 
 gga-u.3   101750514   LIM homeobox transcription factor 1-alpha-like 
 hsa-u.4   LMX1B   LIM homeobox transcription factor 1 beta 
 mmu-u.4   Lmx1b   LIM homeobox transcription factor 1 beta 
 rno-u.3   Lmx1a   LIM homeobox transcription factor 1 alpha 
 cfa-u.3   LMX1B   LIM homeobox transcription factor 1 beta 
 dre-u.3   lmx1ba   LIM homeobox transcription factor 1, beta a 
 dre-u.3   lmx1al   LIM homeobox transcription factor 1, alpha-like 
 dre-u.3   lmx1bb   LIM homeobox transcription factor 1, beta b 
 dme-u.3   CG4328   uncharacterized protein 
 dme-u.3   Lmx1a   LIM homeobox transcription factor 1 alpha 
 cel-u.3   lim-6   LIM domain family 
 spo-u.3   SPBC3H7.03c   alpha-ketoglutarate dehydrogenase 

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Top 50 coexpressed genes to LMX1B (gga-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 gga232   Caffeine metabolism  1 5 -
 gga2010   ABC transporters  1 40 -
 gga3460   Fanconi anemia pathway  1 50 -
 gga4070   Phosphatidylinositol signaling system  1 89 -
 gga230   Purine metabolism  2 125 -

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gga:LMX1B (LIM homeobox transcription factor 1 beta) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

gga-u.3
for
LMX1B
gga-r.3
for
LMX1B
gga-m.5
for
LMX1B
gga-u.3
for
LMX1A
gga-u.3
for
101750514
hsa-u.4
for
LMX1B
mmu-u.4
for
Lmx1b
rno-u.3
for
Lmx1a
cfa-u.3
for
LMX1B
dre-u.3
for
lmx1ba
dre-u.3
for
lmx1al
dre-u.3
for
lmx1bb
dme-u.3
for
CG4328
dme-u.3
for
Lmx1a
cel-u.3
for
lim-6
spo-u.3
for
SPBC3H7.03c
1 HOXD11 homeobox D11 395328 3.5 1.4
 1.8
 0.6
 1.3
 2.5
 4.2

3.3
2.7
 -0.2
-0.7
 2.2
0.4



2 UNCX UNC homeobox 416458 3.2 1.8
1.6
 2.4
 4.6
 7.2
 2.1
1.6
1.6
 1.4
0.3
 2.2
1.5
 1.7
 1.8
 1.1
3 NSMAF neutral sphingomyelinase activation associated factor 421137 3.1 0.8
 2.2
 -0.2
 0.8
 -0.2
 -0.6
 -0.5
 -1.0
 0.6
 -0.2
 -0.7



4 FOXD2 forkhead box D2 395795 3.0 1.6
 1.2
 2.2
1.4
 1.6
1.1
 4.6
4.6
 5.0
4.8
 1.3
0.9
 2.8
2.3
 2.3
2.0
 3.1
1.2
 3.9
3.2
 5.0
3.9
 7.2
3.5
 5.7
2.0
5 HOXD4 homeobox D4 424139 2.9 0.9
 1.9
 2.6
1.3
 1.7
0.9
 2.0
2.0
 3.7
2.8
 1.1
0.1
 1.3
0.9
 2.9
2.0
 2.5
0.5
 4.4
3.7
 2.6
 2.0
 1.9
6 PGPEP1L pyroglutamyl-peptidase I-like 100859846 2.9 1.6
-0.4
-0.5
 0.7
-0.3
 -0.5
 0.4
 -0.1
-0.6
 1.4
 0.6
 -0.7
 -0.7
 0.0
 -1.3
 0.4
-0.5
7 HOXA13 homeobox A13 373934 2.8 0.7
 1.9
 0.9
 -0.8
 3.3

1.5
 2.6
2.3
 0.2
-0.2
 1.6
-0.3



8 HOXA11 homeobox A11 395327 2.8 0.6
 2.0
 1.4
 0.9
 1.1
 3.5
 -0.2
 -0.1
 2.8
 0.6
 1.3



9 IRX1 iroquois homeobox 1 374185 2.8 0.7
 1.9
 1.2
 1.2
 3.7
 5.3
 -0.2
 1.6
 0.2
 -1.1
 3.4



10 GPC3 glypican 3 770863 2.7 0.8
 1.7
 0.3
-0.6
 1.9
1.6
 1.1
-0.1
 1.5
0.4
 -0.4
-1.0
 -1.4
 2.3
1.3
 2.7
1.3
 1.1
0.8
 -1.5
 0.3
 1.1
 -0.3
11 ATOH1 atonal homolog 1 (Drosophila) 101750213 2.7 1.5
3.7
 0.3
2.0

1.9
 -0.8
 2.6



12 LTK leukocyte receptor tyrosine kinase 423216 2.7 1.0
 1.5
 1.9
 0.8
 0.2
 0.8
 0.2
-1.0
 0.4
 0.6
-0.0
 1.6
-0.0
 0.2
-1.7
 0.4
 0.5
 0.3
13 ABCC3 ATP binding cassette subfamily C member 3 422099 2.7 0.9
 1.6
 0.8
0.4
 0.0
-0.1
 0.7
0.2
 0.6
0.4
 0.2
-0.1
 1.0
0.7
 2.2
1.3
 1.0
0.6
 0.5
0.1
 1.3
0.6
 1.4
0.3
 0.7
0.6
14 DPP10 dipeptidyl peptidase like 10 424280 2.6 1.0
 1.5
 1.2
0.8
 0.5
0.1
 -0.1
-0.7
 0.6
0.3
 1.6
0.6
 -0.2
-0.6
 0.7
0.0
 0.8
0.6
 -0.2
-0.3
 1.3
0.3
 0.5
0.5
 2.3
0.2
 0.5
15 HOXD12 homeobox D12 396178 2.6 1.2
 1.3
 0.6
 1.7



3.1
 -1.1
 2.2



16 LOC121109589 uncharacterized LOC121109589 121109589 2.6 1.4













17 TFAP2B transcription factor AP-2 beta 395713 2.6 1.3
 1.1
 0.4
-0.3
 1.4
1.3
 3.0
2.2
 6.9
5.1
 0.7
0.3
 2.1
1.6
 0.8
0.5
 0.2
-0.1
 3.2
2.9
 3.4
 3.9
 0.8
18 SOX10 SRY-box 10 395573 2.6 1.0
 1.4
 1.8
0.4
 -0.0
-0.2
 3.3
2.7
 4.2
1.6
 1.6
0.3
 2.9
0.8
 1.8
0.8
 1.2
-0.2
 3.9
1.3



19 MSX2 msh homeobox 2 395245 2.5 1.0
 1.4
 2.2
1.2
 0.2
-1.2
 4.1
3.0
 5.2
3.6
 4.1
1.8
 2.3
0.3
 3.1
2.6
 0.4
0.1
 3.1
2.7
 1.4
 1.0
 1.0
20 PDE9A phosphodiesterase 9A 418538 2.5 1.3
 1.1
 2.6
 0.5
 1.2
 -0.5
 1.3
-0.4
-0.6
 1.5
0.7
 1.1
0.1
 -0.9
 -0.5

21 SLC6A20 solute carrier family 6 member 20 420699 2.5 1.1
 1.3
 0.0
 2.5
-0.3
-0.3
 0.1
-0.1
 0.3






22 GPR143 G protein-coupled receptor 143 418652 2.5 1.5
 0.9
 -0.1
 0.1
 2.3

-0.2
 0.8
 -0.7
 0.9



23 TMEM72 transmembrane protein 72 100859699 2.5 1.4
1.7
 1.5
1.2
 2.0
-0.0
 0.2
 0.7



24 LOC101750998 uncharacterized LOC101750998 101750998 2.5 1.4













25 ARHGAP18 Rho GTPase activating protein 18 421706 2.5 0.6
 1.7
 0.2
-0.1
 1.2
0.1
 1.0
0.3
 0.4
-0.4
 0.9
-0.2
 0.1
-0.0
 0.5
0.2
 3.0
0.4
 1.2
0.4
 0.1
 -0.8

26 HOXD3 homeobox D3 431212 2.5 1.4
2.1
 0.4
 2.0
 3.8
 1.0
 0.3
 3.1
 0.3
 3.5



27 SHOX short stature homeobox 418669 2.4 1.7
 0.7
 2.2
1.7
 2.5
0.9
 2.3
 5.0
 1.9
 0.0
 0.6
0.4
 2.1
1.6
 1.2
0.7
 4.3
4.1
 5.2
4.6
 1.8
1.4
 -0.3
28 PHF10 PHD finger protein 10 100857350 2.4 1.4
-0.6
 0.4
 -0.4
 -0.3
 -0.7
 -1.6
 -1.3
 -0.1
 -0.7
 -0.6
 -0.4

29 LOC101747367 uricase-like 101747367 2.4 1.4
0.6
 -0.2
-1.1
 -0.4
-0.7
 -1.4
 -0.8
 -1.3
 -1.1

30 LOC769139 feather keratin 1-like 769139 2.4 1.4













31 LOC431322 feather keratin 1-like 431322 2.4 1.3













32 LOC419389 uncharacterized LOC419389 419389 2.4 0.4
 1.9












33 PAX7 paired box 7 395942 2.4 1.1
 1.2
 2.6
1.0
 1.4
0.8
 2.8
 5.8

1.7
1.0
 0.3
-0.3
 2.4
1.2
 0.7
 0.9
 0.6
34 GATA3 GATA binding protein 3 419106 2.4 1.1
 1.2
 0.5
-0.4
 2.8
1.1
 4.2
3.6
 2.5
1.2
 0.5
0.5
 1.9
1.1
 1.0
-0.0
 1.1
0.7
 1.5
1.4
 1.1
0.8
 1.6
1.4
 1.0
0.9
35 APCDD1L APC down-regulated 1 like 419316 2.4 1.2
 1.0
 1.4
 0.8

-0.5
1.7
 -2.2
 0.5



36 PRDM12 PR/SET domain 12 417183 2.3 1.6
 0.7
 0.6
 0.5
2.2
 1.2
0.9
 -2.0
 2.3



37 TLL2 tolloid-like 2 107053676 2.3 1.3
0.8
0.3
 1.2
0.7
 1.3
0.3
 -0.3
-0.4
 2.4
0.5
 -0.3
-1.2
 0.9
0.0
 0.7
-0.3
 0.4
-0.4
 1.1
1.0
 0.9
0.6
 3.1
38 NANOG Nanog homeobox 100272166 2.3 1.3
-0.7
 0.2
 -0.6
 -0.1






0.5
 -0.6
39 PANX2 pannexin 2 426934 2.3 1.2
 1.0
 0.7
 -0.6
 2.4
 1.9
 -1.1
 1.3
 -0.7
 0.9
 -0.9



40 HOXA2 homeobox A2 396055 2.3 0.6
 1.6
 0.9
0.1
 1.4
0.8
 1.0
0.6
 2.0
1.3
 0.6
 -0.3
 2.6
1.7
 0.3
-0.7
 3.4
2.5
 3.2
 1.9

41 LOC100859690 feather keratin 2-like 100859690 2.3 1.3













42 NPHS2 NPHS2, podocin 424422 2.3 1.4
 0.8
 0.1
 1.2

-0.4
 0.8




2.2
0.7
 -1.3
43 FOXD1 forkhead box D1 396109 2.3 0.9
 1.3
 2.2
1.4
 1.6
1.1
 4.6
4.6
 5.0
4.8
 1.3
0.9
 2.8
2.3
 2.3
2.0
 3.1
1.2
 3.9
3.2
 5.0
3.9
 7.2
3.5
 5.7
2.0
44 EMX2 empty spiracles homeobox 2 423923 2.3 0.7
 1.5
 1.5
0.3
 1.5
0.4
 3.1
 3.2
1.0
 0.9
0.7
 2.1
 2.1
0.8
 0.8
0.5
 2.3
1.6
 0.7
0.1
 1.2
1.0
 0.6
45 SLC12A1 solute carrier family 12 member 1 415433 2.3 1.0
 1.2
 0.6
-0.3
 1.4
-1.2
 0.4
0.0
 1.6
0.4
 1.8
-0.4
 -0.4
-0.5
 0.4
-0.0
 1.8
0.7
 -0.4
-1.2
 0.8
0.2
 0.8
0.8

46 HOXC9 homeobox C9 425723 2.3 0.6
 1.5
 0.9
0.7
 1.5
0.9
 4.8
2.8
 4.5
2.7
 0.4
-0.0
 1.0
0.7
 2.0
1.9
 0.3
0.0
 3.2
3.1
 -0.2
 1.5
 0.4
47 RFX4 regulatory factor X4 418070 2.3 1.1
 1.1
 1.9
0.3
 1.0
0.9
 2.0
1.3
 2.2
0.9
 1.0
0.7
 0.8
0.4
 1.2
1.0
 1.0
0.3
 2.8
1.1
 1.2
 0.6
 -0.2
 1.2
48 FANCM Fanconi anemia complementation group M 100857997 2.3 1.3
0.8
 -1.1
0.5
-0.1
 -0.7
 -0.0
 0.0
 -1.2
 -0.0

49 PAX2 paired box 2 395574 2.3 0.3
 1.9
 0.3
-0.3
 1.5
1.3
 0.9
 4.6
1.5
 -0.2
 1.1
0.4
 1.9
0.7
 2.4
1.3
 4.0
3.0

0.1
50 PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 415587














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