Orthologous genes in OrthoFinder**

Species Gene Description
 rno-u.3   Vps53   VPS53 subunit of GARP complex 
 rno-r.3   Vps53   VPS53 subunit of GARP complex 
 rno-m.5   Vps53   VPS53 subunit of GARP complex 
 mmu-u.4   Vps53   VPS53 GARP complex subunit 
 hsa-u.4   VPS53   VPS53 subunit of GARP complex 
 mcc-u.3   VPS53   VPS53 subunit of GARP complex 
 cfa-u.3   VPS53   VPS53 subunit of GARP complex 
 gga-u.3   VPS53   VPS53 subunit of GARP complex 
 dre-u.3   vps53   VPS53 subunit of GARP complex 
 dme-u.3   Vps53   Vacuolar protein sorting 53 
 cel-u.3   vps-53   Vacuolar protein sorting-associated protein 53 homolog 
 sce-u.3   VPS53   Vps53p 
 spo-u.3   ung1   uracil DNA N-glycosylase Ung1 

close


Top 50 coexpressed genes to Vps53 (rno-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 rno4144   Endocytosis  6 242 4.07
 rno5017   Spinocerebellar ataxia  4 136 3.12
 rno5016   Huntington disease  4 268 2.06
 rno4120   Ubiquitin mediated proteolysis  3 137 2.08
 rno5022   Pathways of neurodegeneration - multiple diseases  4 477 -

close


rno:Vps53 (VPS53 subunit of GARP complex) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

rno-u.3
for
Vps53
rno-r.3
for
Vps53
rno-m.5
for
Vps53
mmu-u.4
for
Vps53
hsa-u.4
for
VPS53
mcc-u.3
for
VPS53
cfa-u.3
for
VPS53
gga-u.3
for
VPS53
dre-u.3
for
vps53
dme-u.3
for
Vps53
cel-u.3
for
vps-53
sce-u.3
for
VPS53
spo-u.3
for
ung1
1 Vps11 VPS11 core subunit of CORVET and HOPS complexes 315600 7.3 3.8
 3.1
 1.7
 1.8
 -0.3
 0.0
 2.3
 5.3
 -0.5
 6.1
 1.3
 1.1
2 Stambp Stam binding protein 171565 6.8 4.1
 2.4
 2.9
-1.1
 0.5
0.1
 0.4
-1.5
 0.2
-0.1
 3.0
0.4
 2.8
2.2
 2.1


3 Exoc3 exocyst complex component 3 252881 6.7 3.1
 3.2
 2.8
1.0
 2.4
-0.7
 0.3
-0.6
 1.6
-0.3
 3.5
1.3
 4.5
-1.9
 5.8
 5.9
 1.7
 -0.6
4 Vps39 VPS39 subunit of HOPS complex 362199 6.5 3.4
 2.7
 0.1
 4.6
 1.9
 3.8
 2.8
 1.9
 4.1
 4.2
 3.9
 -1.3
5 Anapc2 anaphase promoting complex subunit 2 296558 6.3 4.0
 2.0
 1.9
 1.7
 1.6
 4.1
 1.5
 3.4
 5.8
 3.5
 0.5
 1.1
6 Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit 291703 6.1 2.8
 3.0
 4.3
 1.0
 1.1
 1.3
 2.5
 2.2
 3.2
 0.7
 1.3
 0.4
7 Dmap1 DNA methyltransferase 1-associated protein 1 298447 5.8 2.6
 3.0
 1.2
 -0.3
 0.2
 -0.6
 0.7
 1.1
 0.2
 -0.5
 -0.1
 0.9
8 Nub1 negative regulator of ubiquitin-like proteins 1 296731 5.6 3.0
 2.3
 0.7
 1.4
 -0.2
 1.4
 -0.6
 -0.5
 2.4
-0.8

-0.3
9 Thoc5 THO complex 5 360972 5.6 2.9
 2.4
 2.9
 2.2
 0.9
 1.5
 -0.1
 0.6
 1.8
 2.1

10 Vps45 vacuolar protein sorting 45 homolog 64516 5.5 3.7
 1.6
 6.1
 2.1
 1.5
 1.1
 2.2
 4.4
 5.6
 -0.4
 -0.2
 -0.2
11 Vps16 VPS16 core subunit of CORVET and HOPS complexes 296159 5.5 2.9
 2.3
 1.4
 1.8
 3.1
 2.0
 -0.2
 6.0
 4.6
 4.4
 1.3
 0.7
12 Ints4 integrator complex subunit 4 308837 5.5 2.8
 2.4
 0.9
 2.9
 0.6
 2.5
 1.1
 0.9
 0.9
 2.3

13 Elp3 elongator acetyltransferase complex subunit 3 100362548 5.3 2.9
1.0
 2.0
 0.8
 1.6
 3.0
 0.8
 0.6
 0.3
 -0.7
14 Vta1 vesicle trafficking 1 292640 5.3 2.9
 2.2
 2.3
 0.7
 -2.3
 0.6
 0.9
 2.4
 1.8


15 Dym dymeclin 291433 5.3 2.5
 2.6
 1.1
 2.1
 1.7
 0.6
 -0.0
 2.9
 1.9
 5.2

16 Cpsf3 cleavage and polyadenylation specific factor 3 298916 5.3 2.2
 2.8
 2.3
 0.1
 0.4
 1.4
 0.1
 1.7
 1.7
 4.4
 1.6
 0.8
17 Efl1 elongation factor like GTPase 1 308789 5.2 3.1
 1.9
 2.5
 0.6
 0.8
 1.2
 1.0
 1.4
 0.3
 3.1
 1.2
 0.7
18 Snw1 SNW domain containing 1 500695 5.2 2.8
0.2
 -0.6
 -0.5
 0.1
 1.3
 1.5
 0.1
 2.6
 0.8
 0.8
19 Atxn10 ataxin 10 170821 5.1 2.9
 2.0
 1.2
 1.3
 0.9
 -0.1
 -0.1
 0.5

1.2
 -1.2
20 Mpi mannose phosphate isomerase 300741 5.1 2.3
 2.6
 0.8
 0.9
 0.1
 0.6
 1.2
 2.3
 -1.0
 0.6
-0.3
 -0.9
21 Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 287984 5.1 2.7
 2.2
 1.3
 2.3
 1.3
 2.0
 1.5
 3.3
 0.7
 0.4
 -0.0
 -0.2
22 Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component 361531 5.1 2.6
 2.2
 2.5
 1.3
 0.7
 1.6
 2.5
 2.8
 0.5
 3.0
 0.5
 -0.2
23 Vps8 VPS8 subunit of CORVET complex 287990 5.0 2.5
 2.3
 2.8
1.4
 1.6
 2.4
 1.6
 3.7
 5.1
 1.7
 -0.6
24 Dis3l DIS3-like exosome 3'-5' exoribonuclease 363077 5.0 2.2
 2.6
 0.2
 0.5
 0.2
 0.2
 -0.4
 4.4



25 Pi4ka phosphatidylinositol 4-kinase alpha 64161 5.0 2.3
 2.5
 1.7
 5.7
 3.1
 3.5
 1.7
 1.2
1.0
 1.0
 2.2
 1.7
 0.3
26 Srp68 signal recognition particle 68 363707 4.9 3.3
 1.5
 1.6
 2.8
 0.5
 1.8
 1.1
 4.5
 2.2
 2.0

27 Atp6v1h ATPase H+ transporting V1 subunit H 297797 4.9 2.6
 2.1
 2.1
 4.5
 0.2
 1.5
 2.0
 1.6
 -0.1
 1.5
-0.9
 1.5
28 Drg2 developmentally regulated GTP binding protein 2 497915 4.9 2.4
 2.4
 1.8
0.8
 4.3
1.2
 2.0
-0.5
 0.0
-0.1
 0.4
-0.7
 0.8
-1.3
 -0.7
-1.2
 1.2
-1.1
 0.9
0.2
 -0.7
-2.0
29 Vps33b VPS33B, late endosome and lysosome associated 64060 4.9 3.4
 1.3
 5.3
3.1
 3.9
3.3
 2.4
1.2
 2.3
0.1
 2.5
1.5
 4.5
4.0
 2.2
0.6
 3.9
3.2
 0.9
 -1.5
30 Ecd ecdysoneless cell cycle regulator 688968 4.9 2.7
1.5
 2.5
 0.2
 1.8
 0.3
 0.5
 3.5


31 Dis3l2 DIS3-like 3'-5' exoribonuclease 2 367307 4.9 3.5
 1.2
 -0.3
 5.4
 2.3
 1.1
 2.4
 1.4
 2.9
 0.4

32 Sugp1 SURP and G patch domain containing 1 290666 4.8 2.4
 2.3
 1.9
 1.0
 0.9
 -0.1
 3.1
 -0.0
 1.3


33 Ap2a1 adaptor related protein complex 2 subunit alpha 1 308578 4.8 2.7
1.6
1.1
 3.2
2.7
 2.1
1.9
 1.4
1.1
 1.7
 3.6
 0.7
 1.3
 2.6
34 Mtor mechanistic target of rapamycin kinase 56718 4.8 2.3
 2.3
 0.9
 6.0
 7.1
 0.9
 2.5
 2.1
 3.5
 1.9
 1.0
0.7
 0.1
-0.9
35 Nrdc nardilysin convertase 25499 4.7 2.7
 1.9
 0.4
 1.4
 1.2
 0.4
 0.1
 3.9
1.8
 3.5
-0.1


36 Tsg101 tumor susceptibility 101 292925 4.7 3.1
 1.4
 -0.1
 -0.1
 -1.0
 1.3
 0.3
 3.1
0.2
 2.6
 -1.4
 1.1
37 Armh3 armadillo-like helical domain containing 3 103689959 4.6 2.5
2.0
 5.7
 2.5
 4.2
 0.3
 3.2
 4.5


38 Vps35l VPS35 endosomal protein sorting factor like 361635 4.6 3.0
 1.4
 3.8
 3.6
 0.5
 5.6
 0.8
 6.4
 3.7
 6.0

39 Wwp2 WW domain containing E3 ubiquitin protein ligase 2 291999 4.6 2.4
 2.0
 1.0
0.8
 2.6
0.6
 1.1
-0.3
 2.7
1.1
 2.5
0.8
 2.4
-0.2
 1.9
 1.7

40 Rint1 RAD50 interactor 1 296750 4.5 2.5
 1.9
 0.6
 1.8
 -1.0
 0.5
 2.1
 4.5
 4.5


41 Ctnnbl1 catenin, beta like 1 296320 4.5 1.9
 2.4
 2.2
 1.5
 0.9
 1.2
 1.9
 1.1
 0.2
 3.1

42 Ubl7 ubiquitin-like 7 300744 4.5 2.4
 2.0
 1.1
 -0.3
 0.4
 0.1
 1.0
 2.1



43 Gars glycyl-tRNA synthetase 297113 4.5 2.8
 1.5
 -0.8
 0.5
 -0.4
 0.3
 0.8
 1.0
 1.7
 1.6
 -0.1
-0.5
 -0.0
44 Prmt9 protein arginine methyltransferase 9 291947 4.5 2.6
 1.8
 1.5
 -0.2
 -0.5
 -1.3
 2.0
 2.3
4.0

45 Trappc11 trafficking protein particle complex subunit 11 290746 4.5 2.4
 1.9
 2.7
 2.1
 0.7
 3.5
 2.8
 4.0
 2.9
 1.3

46 Uba1 ubiquitin-like modifier activating enzyme 1 314432 4.5 2.7
 1.6
 2.4
-0.3
 2.9
0.9
 0.7
0.2
 3.5
1.7
 1.7
0.1
 1.2
0.6
 1.4
 1.8
 -0.5
47 Smap1 small ArfGAP 1 684800 4.4 3.1
 1.2
 2.3
0.7
 2.0
2.0
 1.0
0.1
 1.2
-1.5
 2.4
1.9
 2.9
0.3
 0.1
 1.4
 0.2
48 Babam2 BRISC and BRCA1 A complex member 2 362704 4.4 2.8
 1.5
 0.9
 2.1
 1.2
 0.8
 -0.5
 1.9



49 Rtfdc1 replication termination factor 2 domain containing 1 296410 4.4 2.7
 1.5
 2.7
 0.9
 -0.5
 0.2
 0.3
 1.8
 2.5
 2.1
0.7
50 Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 363131 4.4 2.6
 1.7
 1.5
 1.1
 0.6
 2.3
 2.1
 5.0
 4.2
 3.1
 3.4
The preparation time of this page was 0.6 [sec].