Orthologous genes in OrthoFinder**

Species Gene Description
 sce-u.3   UBP2   ubiquitin-specific protease UBP2 
 sce-r.3   UBP2   ubiquitin-specific protease UBP2 
 sce-m.4   UBP2   ubiquitin-specific protease UBP2 
 spo-u.3   pre6   20S proteasome component alpha 4 Pre6 
 hsa-u.4   USP25   ubiquitin specific peptidase 25 
 hsa-u.4   USP28   ubiquitin specific peptidase 28 
 mmu-u.4   Usp25   ubiquitin specific peptidase 25 
 mmu-u.4   Usp28   ubiquitin specific peptidase 28 
 rno-u.3   Usp25   ubiquitin specific peptidase 25 
 rno-u.3   Usp28   ubiquitin specific peptidase 28 
 gga-u.3   USP28   ubiquitin specific peptidase 28 
 gga-u.3   USP25   ubiquitin specific peptidase 25 
 dre-u.3   usp28   ubiquitin specific peptidase 28 
 dre-u.3   usp25   ubiquitin specific peptidase 25 
 cel-u.3   K02C4.3   USP domain-containing protein;putative ubiquitin carboxyl-terminal hydrolase K02C4.3 
 cel-u.3   F59E12.6   USP domain-containing protein 
 mcc-u.3   USP28   ubiquitin specific peptidase 28 
 mcc-u.3   USP25   ubiquitin specific peptidase 25 
 cfa-u.3   USP28   ubiquitin specific peptidase 28 
 cfa-u.3   USP25   ubiquitin specific peptidase 25 

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Top 50 coexpressed genes to UBP2 (sce-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sce4120   Ubiquitin mediated proteolysis  4 51 3.02
 sce4144   Endocytosis  4 79 2.32
 sce4141   Protein processing in endoplasmic reticulum  4 93 2.07
 sce3013   Nucleocytoplasmic transport  3 65 -
 sce3008   Ribosome biogenesis in eukaryotes  2 90 -

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sce:UBP2 (ubiquitin-specific protease UBP2) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

sce-u.3
for
UBP2
sce-r.3
for
UBP2
sce-m.4
for
UBP2
spo-u.3
for
pre6
hsa-u.4
for
USP25
hsa-u.4
for
USP28
mmu-u.4
for
Usp25
mmu-u.4
for
Usp28
rno-u.3
for
Usp25
rno-u.3
for
Usp28
gga-u.3
for
USP28
gga-u.3
for
USP25
dre-u.3
for
usp28
dre-u.3
for
usp25
cel-u.3
for
K02C4.3
cel-u.3
for
F59E12.6
mcc-u.3
for
USP28
mcc-u.3
for
USP25
cfa-u.3
for
USP28
cfa-u.3
for
USP25
1 FMP27 Fmp27p 851175 YLR454W 6.4 3.8
 2.5
0.3
 2.3
 1.2
 1.1
 -0.1
 1.0
 1.2
 -0.5

0.7
 2.9
 0.1
 1.1
 0.3
 0.6
2 CDC53 cullin CDC53 851424 YDL132W 6.4 3.0
 3.2
 0.4
 2.6
 2.2
 1.9
 1.0
 2.2
 1.5
 0.6
 3.2
 0.7
0.1
 0.7
0.4
 0.5
0.2
 0.7
0.7
 -0.1
 4.8
 1.4
 2.5
3 GYP5 GTPase-activating protein GYP5 855827 YPL249C 6.3 2.3
 3.7
1.3
0.1
 0.4
-1.0
 0.1
-0.3
 -0.1
-1.1
 0.8
-0.1
 -0.2
-1.5
 -0.2
-0.4
 0.9
0.7
 -0.2
-0.5
 1.2
-0.6
 -0.8
 -0.6
 1.2
-1.8
 0.7
0.3
 -1.0
-1.0
 1.7
0.0
4 PIM1 ATP-dependent Lon protease PIM1 852259 YBL022C 6.2 4.1
 1.9
 0.8
 1.1
 1.5
 -0.2
 1.0
 -0.1
 0.3
 2.7
 1.1
 -0.1
 0.5
 3.8
 0.8
 -1.1
 0.1
 0.7
 -0.9
5 MSN5 karyopherin MSN5 851935 YDR335W 6.1 2.9
 3.0
0.8
 2.3
 -0.3
 -0.0
 -1.6
 0.4
 2.2
 -1.1
 -0.4
 1.6

0.5
 0.6
 1.5
 0.2
6 RPN2 proteasome regulatory particle base subunit RPN2 854735 YIL075C 6.1 2.9
 3.0
 -0.5
 0.0
 0.5
 0.9
 -0.2
 0.5
 1.1
 -0.1
 1.9
 0.9
 -0.9
 -0.7
 0.3
 -0.0
 1.2
 0.3
 0.1
7 TCB1 tricalbin 854253 YOR086C 6.0 3.1
 2.7
















8 UBP15 ubiquitin-specific protease UBP15 855350 YMR304W 6.0 3.5
 2.3
 -2.2
 0.9
 0.6
 2.9
 1.3
 2.9
 1.8
 2.4
 3.5
 0.5
 2.4
 0.2
 1.1
 0.8
 2.0
 -1.1
 2.0
9 ECM29 Ecm29p 856355 YHL030W 5.9 2.7
 3.0
 -0.4
 4.6
 2.5
 1.8
 1.5

1.8
 2.1
 -0.4
 0.1
 -1.6
 1.3
 1.9
 5.9
 1.5
 2.8
10 MDR1 GTPase-activating protein MDR1 852992 YGR100W 5.9 3.2
 2.5
2.2
0.0
 1.8
0.9
 0.8
0.5
 0.9
0.2
 2.0
1.0
 3.3
0.0
 1.2
0.7
 1.9
1.0
 0.6
0.5
 1.2
 1.6
 2.1
 0.7
0.6
 2.1
1.1
 2.1
1.8
 1.2
0.3
11 UFD2 ubiquitin-ubiquitin ligase UFD2 851337 YDL190C 5.9 3.3
-1.1
 1.0
 3.1
 -1.2
 2.6
 -1.2
 1.0
 0.8
 -1.0
 0.2
 0.8
 2.9
 3.6
 3.1
 0.3
 1.7
 -0.2
12 RAD50 MRX complex DNA-binding subunit 855471 YNL250W 5.5 3.4
 2.0
2.1
 1.4
 0.2
 0.7
 0.5
 0.9
 0.8
 1.0
 -0.1
 0.7
 3.2
 1.9
 0.8
 0.4
 1.7
 2.2
13 CHC1 clathrin heavy chain 852666 YGL206C 5.5 3.5
 1.8
1.9
-0.7
 1.3
-1.3
 1.8
 -0.4
 0.3
 -0.6
 2.5
-0.9
 1.1
-0.6
 3.0
0.1
 1.7
0.7
 -0.2
 0.9
 1.0
0.5
 1.0
0.4
 2.4
0.6
 -0.4
-0.6
14 UBR1 E3 ubiquitin-protein ligase UBR1 853096 YGR184C 5.4 3.6
 1.6
0.7
 0.9
 1.3
-0.4
 1.1
-0.3
 2.7
0.3
 3.2
0.1
 1.2
-0.2
 3.1
2.1
 1.5
0.4
 4.4
1.4
 2.4
 0.4
 2.2
1.2
 2.2
1.6
 2.6
1.2
 1.4
0.7
15 VPS13 membrane morphogenesis protein VPS13 850619 YLL040C 5.3 3.3
 1.8
 2.0
 3.6
2.7
 2.0
1.9
 1.8
0.8
 1.1
0.5
 4.5
 -1.2
 0.6
-1.0
 2.9
0.7
 1.8
0.9
 3.7
1.8
 2.2
 1.6
 1.6
0.6
 1.9
1.7
 1.5
1.4
 3.2
1.4
16 APE2 metallo-aminopeptidase 853699 YKL157W 5.2 2.9
2.0
 2.0
 2.7
 1.8
 1.7
 1.4
 2.8
 2.1
 1.4
 0.9
 0.5
 -1.2
 1.3
 3.5
 2.0
 1.1
 0.9
17 CYR1 adenylate cyclase 853452 YJL005W 5.2 3.0
 2.1
1.8
0.3
 1.5
0.5
 2.1
1.9
 0.3
0.1
 2.1
0.7
 1.3
0.5
 1.0
0.7
 1.1
-0.1
 0.8
 3.0
 -0.6
 0.2
 1.1
-0.8
 1.8
0.0
 1.7
-0.5
 1.1
0.9
18 APL5 Apl5p 855906 YPL195W 5.0 2.4
 2.5
1.5
 -0.7
 0.0
 -2.1
 0.3
 -0.7
 0.1
 -0.1
 -0.3
 -1.1
 0.9
 -0.3
 -0.2
 2.3
 -0.3
 -0.5
19 YKU70 ATP-dependent DNA helicase YKU70 855328 YMR284W 5.0 2.7
 2.2
 -0.4
 -1.0
 0.7
 -1.2
 2.3
 -1.1
 -2.1
 1.1
 -1.2
 0.1
 0.7
 -0.1
 0.9
 -0.3
 -0.3
 -1.4
 0.4
20 UBA1 E1 ubiquitin-activating protein UBA1 853670 YKL210W 5.0 2.5
 2.3
2.2
0.6
 3.4
0.7
 4.5
0.9
 0.9
0.1
 1.5
0.1
 0.0
-0.4
 1.5
-0.3
 1.4
-1.4
 1.7
0.2
 0.9
0.4
 2.3
 0.7
 1.3
0.2
 1.5
1.0
 0.7
0.5
 1.0
0.2
21 CDC37 Cdc37p 851746 YDR168W 4.9 2.1
 2.7
 0.4
 0.7
-0.7
 -1.0
-1.2
 -0.1
-0.4
 0.4
-0.4
 0.9
-0.1
 0.5
-0.0
 0.7
-1.1
 2.1
-0.7
 0.3
-0.4
 2.1
1.1
 -0.5
-2.1
 -0.0
-0.3
 -0.0
-1.5
 0.8
0.7
 0.3
0.2
 0.8
-0.5
22 SPT16 chromatin-remodeling protein SPT16 852665 YGL207W 4.8 2.8
 1.9
 -0.6
 -0.3
 1.1
 -0.4
 -0.3
 -1.0
 0.1
 0.5
 -1.3
 -0.1
 3.6
 1.4
 1.0
 1.2
 1.9
 -0.8
 0.4
23 XRN1 chromatin-binding exonuclease XRN1 852702 YGL173C 4.7 2.5
 2.1
3.5
 1.2
 1.8
 0.4
 2.3
 0.6
 0.3
 1.7
 0.7
 2.1
 -1.3
 1.3
 -0.2
 6.9
 1.2
 2.7
24 MLP1 Mlp1p 853970 YKR095W 4.7 3.0
 1.6
1.8
 0.8
 0.9
 0.6
 1.8
 0.2
 1.4
 0.3
 0.8
0.8
 3.3
1.6

1.4
 3.1
 1.2
 1.9
25 BBC1 Bbc1p 853433 YJL020C 4.6 2.4
 2.1
 1.7















26 SEC7 Arf family guanine nucleotide exchange factor SEC7 851748 YDR170C 4.6 2.7
 1.8
 0.6
 4.9
2.5
 2.3
0.9
 4.5
1.1
 0.3
-0.5
 3.1
1.6
 1.1
0.3
 0.7
-0.7
 1.7
-1.0
 0.4
0.1
 1.9
-2.2
 1.0
 1.6
 2.1
-0.6
 3.7
2.8
 1.8
1.1
 2.0
0.1
27 AIP1 Aip1p 855117 YMR092C 4.6 2.5
 1.9
-0.1
 -1.6
 0.6
 -0.1
 -0.0
 2.5
 -0.8
 2.0
 0.3
 0.8
 0.4
-0.5
 0.5
-0.7
 -1.0
 0.5
 -0.6
 -0.4
28 HUL5 ubiquitin-ubiquitin ligase HUL5 852736 YGL141W 4.5 2.5
 1.8
 -2.1
 1.3
 0.5
 2.1
 1.8
 0.1
 1.1
 0.3
 5.5
 1.4
 0.7
 2.7
 3.0
 0.4
 1.7
 0.6
 1.2
29 TPS3 trehalose 6-phosphate synthase/phosphatase complex subunit 855303 YMR261C 4.5 2.2
 2.1










0.8
-0.2
 0.9
0.6



30 CRM1 exportin CRM1 853133 YGR218W 4.5 2.6
 1.8
 -0.3
 0.7
 3.0
 0.7
 0.6
 -1.1
 0.5
 2.3
 2.0
 1.3
0.4
 4.1
1.5
 1.4
 0.5
 0.9
 1.5
 2.1
 2.6
31 UBP6 ubiquitin-specific protease UBP6 850562 YFR010W 4.5 2.0
 2.4
0.3
 -1.0
 1.6
 0.4
 1.0
 -1.0
 0.6
 2.1
 1.1
 -1.4
 0.7
 -0.3
 0.6
 1.7
 0.9
 1.6
32 CDC48 AAA family ATPase CDC48 851431 YDL126C 4.5 2.9
 1.5
0.3
0.1
 1.3
0.6
 1.2
-0.1
 0.5
0.4
 0.1
0.1
 1.4
-0.1
 1.8
0.7
 0.9
0.2
 3.7
0.8
 3.8
1.5
 -0.3
-0.4
 1.4
1.0
 1.4
0.8
 1.7
0.6
 0.4
0.3
 0.7
0.2
33 ROT2 glucan 1,3-alpha-glucosidase ROT2 852530 YBR229C 4.5 2.4
 1.9
 0.6
 2.0
-1.2
 3.1
2.1
 1.3
-1.2
 -0.5
-0.6
 2.5
-1.8
 3.5
0.8
 -0.3
 0.9
 0.2
0.1
 0.8
-0.7
 2.2
-0.1
 0.8
0.5
 1.0
0.2
 1.5
-1.2
 0.2
-0.2
 -0.3
-1.9
34 SPT6 chromatin-remodeling histone chaperone SPT6 853011 YGR116W 4.4 2.8
 1.5
-0.2
 -0.9
 0.3
 -0.7
 0.8
 -0.8
 -0.2
 0.9
 0.8
 2.6
 2.4
 1.9
 0.2
 -0.4
 -0.5
 0.5
35 VAM6 Vam6p 851482 YDL077C 4.4 2.1
 2.2
 0.4
 1.4
 1.4
 -1.1
 1.2
 -1.4
 1.6
 2.0
 2.4
 1.0
 2.5
 2.5
 0.9
 0.4
 0.0
 -0.5
 -0.9
36 MON2 Mon2p 855420 YNL297C 4.4 2.5
 1.8
 -1.7
 0.4
 -0.9
 0.3
 1.7
 1.1
 0.8
 -0.9
 0.6
 -0.3
 0.3
 2.7
 1.8
 1.1
 1.2
 0.8
 1.3
37 SEC10 exocyst subunit SEC10 850863 YLR166C 4.4 2.2
 2.1
0.6
 0.9
 1.5
 -1.5
 2.6
 0.4
 0.2
 0.2
 0.8
 0.4
 2.0
 0.6
 -0.6
 3.3
 2.1
 1.1
38 IMH1 Imh1p 851018 YLR309C 4.3 2.5
 1.8
















39 RPB2 DNA-directed RNA polymerase II core subunit RPB2 854322 YOR151C 4.3 2.6
 1.6
 0.0
 -0.2
 1.1
 0.2
 -0.3
 0.7
 -0.3
 1.3
 1.1
 0.9
 2.6
 2.0
 1.3
 2.0
 2.1
 0.3
 -0.2
40 EDE1 Ede1p 852233 YBL047C 4.2 2.2
 1.9
 2.1
 3.8
1.2
 1.7
1.6
 4.7
-0.3
 1.0
-0.5
 3.4
0.1
 3.1
0.3
 -0.3
-1.6
 1.6
0.3
 1.5
0.1
 2.6
2.3
 0.2
 0.7
 1.6
0.7
 2.9
-0.2
 1.9
1.3
 1.9
-0.7
41 DOP1 Dop1p 851719 YDR141C 4.2 2.4
 1.6
 1.1
 2.5
2.4
 1.1
0.3
 0.7
0.5
 0.4
0.1
 0.5
0.2
 3.3
0.9
 0.7
-1.1
 1.2
0.3
 0.5
0.2
 0.9
0.5
 0.1
 1.3
 0.2
0.1
 2.0
1.5
 0.7
-1.0
 0.7
0.3
42 RAD26 DNA-dependent ATPase RAD26 853492 YJR035W 4.2 2.3
 1.8
1.8
 1.1
 0.1
 1.5
 -1.5
 2.8
 0.9
 1.1
 0.1
 1.4
 0.8
0.8
 0.6
-1.0
 2.6
 1.2
 1.5
 -0.7
43 RIM20 Rim20p 854449 YOR275C 4.1 2.8
 1.3
 -0.1
 3.9
 1.9
 2.3
 0.3
 0.2
 0.9
 -0.1
 2.8
 1.2
 -0.1
 -0.6
 0.3
 0.4
 2.4
 1.1
 0.9
44 OSH2 oxysterol-binding protein related protein OSH2 851543 YDL019C 4.1 2.0
 2.0
-0.6
 -0.7
 0.9
-1.0
 1.5
-0.0
 -2.0
 0.5
 0.1
-0.4
 3.1
3.0
 1.2
-0.3
 0.1
0.0
 -1.1
 -0.4
 2.8
-1.3
 1.4
-0.0
 1.1
0.8
 0.7
-1.0
45 RPN7 proteasome regulatory particle lid subunit RPN7 856223 YPR108W 4.1 1.9
 2.1
-1.0
 -2.4
 0.5
 -1.0
 -0.2
 -0.1
 1.1
 0.9
 1.8
 -1.9
 0.9
 0.5
 -0.6
 2.2
 -0.4
 -0.9
46 VID30 glucose-induced degradation complex subunit VID30 852624 YGL227W 4.1 2.3
 1.7
3.0
0.0
 0.4
-0.5
 2.9
2.6
 2.0
1.0
 4.2
2.2
 2.5
2.1
 0.9
0.4
 3.5
1.3
 0.4
-0.4
 2.7
2.1
 1.6
0.4
 1.0
0.1
 2.0
-0.4
 3.2
-1.4
 0.5
0.2
 2.1
-0.3
47 RAV1 Rav1p 853490 YJR033C 4.1 3.1
 0.9
3.3
1.5
 2.0
0.7
 2.8
0.2
 1.2
0.4
 1.1
0.5
 0.7
-0.5
 0.9
0.1
 1.0
0.9
 0.7
0.3
 1.5
0.8
 0.2
 1.3
 1.4
1.0
 2.0
1.1
 0.4
0.0
 2.5
-0.8
48 CUE3 Cue3p 852768 YGL110C 4.0 1.7
 2.2
 -0.3















49 TAO3 Tao3p 854677 YIL129C 4.0 2.9
 1.0
 1.6
-2.2
 1.2
0.6
 1.5
-0.5
 1.7
-1.4
 1.3
0.3
 1.3
-0.3
 1.9
-0.6
 1.1
-0.6
 2.7
-0.1
 2.6
1.9
 2.5
1.1
 2.2
 0.8
 2.9
-1.3
 2.3
1.6
 1.3
0.8
 1.4
0.1
50 BPT1 ATP-binding cassette bilirubin transporter BPT1 850645 YLL015W 4.0 1.7
 2.2
1.0
-0.0
 1.3
0.2
 0.7
-0.2
 1.1
0.3
 1.3
0.9
 2.9
0.5
 0.8
0.3
 2.4
0.8
 1.0
0.7
 2.6
1.8
 1.6
1.6
 3.5
2.1
 2.4
0.7
 1.2
0.3
 1.3
1.2
 0.4
0.1
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