Orthologous genes in OrthoFinder**

Species Gene Description
 sce-u.3   PPM2   tRNA methyltransferase PPM2 
 sce-r.3   PPM2   tRNA methyltransferase PPM2 
 hsa-u.4   LCMT2   leucine carboxyl methyltransferase 2 
 mmu-u.4   Lcmt2   leucine carboxyl methyltransferase 2 
 rno-u.3   Lcmt2   leucine carboxyl methyltransferase 2 
 gga-u.3   LCMT2   leucine carboxyl methyltransferase 2 
 dre-u.3   lcmt2   leucine carboxyl methyltransferase 2 
 mcc-u.3   LCMT2   leucine carboxyl methyltransferase 2 
 cfa-u.3   LCMT2   leucine carboxyl methyltransferase 2 

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Top 50 coexpressed genes to PPM2 (sce-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sce3008   Ribosome biogenesis in eukaryotes  9 78 6.55
 sce3020   RNA polymerase  2 31 -
 sce3030   DNA replication  1 31 -
 sce3018   RNA degradation  2 64 -
 sce3040   Spliceosome  1 81 -

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sce:PPM2 (tRNA methyltransferase PPM2) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

sce-u.3
for
PPM2
sce-r.3
for
PPM2
hsa-u.4
for
LCMT2
mmu-u.4
for
Lcmt2
rno-u.3
for
Lcmt2
gga-u.3
for
LCMT2
dre-u.3
for
lcmt2
mcc-u.3
for
LCMT2
cfa-u.3
for
LCMT2
1 PWP2 snoRNA-binding rRNA-processing protein PWP2 850422 YCR057C 5.6 3.1
 1.5
 2.4
 3.3
 5.1
 3.0
 0.9
 0.6
2 DHR2 RNA helicase 853784 YKL078W 5.3 3.0
 1.9
1.8
 1.8
1.8
 2.3
2.3
 2.1
1.4
 2.5
2.4
 1.6
1.1
 2.1
1.8
3 EMW1 tetratricopeptide repeat-containing protein EMW1 855403 YNL313C 5.2 3.0
 0.4
 1.3
 1.6
 2.8
 2.4
 1.5
 1.2
4 UTP10 snoRNA-binding rRNA-processing protein UTP10 853335 YJL109C 5.2 3.0
 1.3
 0.6
 2.1
 1.7
 2.2
 1.8
 -0.5
5 RTT10 Rtt10p 855919 YPL183C 4.8 2.7
 1.1
 1.2
 0.8
 0.0
 4.6
 0.7
 0.3
6 NRP1 Nrp1p 851387 YDL167C 4.8 2.7






7 TRM3 tRNA (guanosine(18)-2'-O)-methyltransferase 851446 YDL112W 4.8 2.7
 0.3
 0.5
 0.4
 2.0
 5.2
 -0.2
 0.2
8 UTP4 Utp4p 851924 YDR324C 4.8 2.7
 2.4
 0.8
 0.8
 1.5
 4.4
 2.9
 1.0
9 SWC7 Swc7p 851101 YLR385C 4.7 2.6






10 NAN1 Nan1p 855977 YPL126W 4.6 2.6
 1.4
 0.3
 1.7
 1.0
 4.6
 3.6
 0.1
11 PPR1 Ppr1p 850701 YLR014C 4.6 2.6






12 FAP1 Fap1p 855708 YNL023C 4.6 2.6
 2.3
 1.1
 1.6
 -0.2
 -0.1
 0.5
 0.5
13 SYO1 Syo1p 851497 YDL063C 4.6 2.6
 2.0
 1.9
 1.9
 2.2
 4.3
 0.3
 1.4
14 MCM10 Mcm10p 854656 YIL150C 4.6 2.6
 0.7
 -1.5
 0.7
 0.8
 0.3
 0.8
 0.2
15 RRP12 mRNA-binding protein RRP12 856095 YPL012W 4.5 2.6
 0.6
 0.5
 1.0
 2.3
 1.9
 0.8
 0.6
16 MTR4 ATP-dependent RNA helicase MTR4 853397 YJL050W 4.4 2.5
 0.9
0.6
 0.5
-0.5
 0.6
0.5
 -0.4
-0.7
 3.5
0.9
 0.6
0.1
 1.2
0.4
17 RPA190 DNA-directed RNA polymerase I core subunit RPA190 854519 YOR341W 4.4 2.5
 2.0
 0.4
 1.0
 3.5
 3.2
 1.3
 1.2
18 URB2 Urb2p 853498 YJR041C 4.3 2.4






19 PUL4 Pul4p 855800 YNR063W 4.2 2.4






20 DBP7 putative ATP-dependent RNA helicase 853894 YKR024C 4.2 2.4
 2.0
 1.6
 3.5
 0.7
 4.6
 2.2
 1.4
21 NOG2 putative GTPase NOG2 855789 YNR053C 4.1 2.3
 0.9
 0.7
 1.6
 2.3
 2.5
 2.1
 0.8
22 GFD2 Gfd2p 850321 YCL036W 4.1 2.3






23 UTP13 Utp13p 850919 YLR222C 4.1 2.3
 1.1
 2.5
 3.9
 3.8
 1.7
 0.9
 -0.0
24 KRE33 ribosome biosynthesis protein KRE33 855591 YNL132W 4.0 2.3
 2.5
 1.2
 3.0
 3.4
 2.7
 2.5
 1.2
25 TRM5 tRNA (guanine) methyltransferase 856467 YHR070W 4.0 2.3
 3.3
 2.8
 4.5
 1.6
 6.6
 4.5
 1.6
26 TOD6 Tod6p 852226 YBL054W 4.0 2.3






27 HSH155 U2 snRNP complex subunit HSH155 855332 YMR288W 3.9 2.2
 -2.0
 -1.9
 -1.0
 -0.1
-1.7
 -0.6
28 ENP1 snoRNA-binding rRNA-processing protein ENP1 852549 YBR247C 3.9 2.2
 3.4
 1.7
 2.2
 1.4
 1.0
 4.3
 1.0
29 RPO31 DNA-directed RNA polymerase III core subunit RPO31 854283 YOR116C 3.9 2.2
 1.1
 1.4
 2.3
 2.6
 1.5
 2.1
 0.4
30 BMT6 25S rRNA (uracil2843-N3)-methyltransferase 850752 YLR063W 3.8 2.2






31 RIM9 Rim9p 855085 YMR063W 3.8 2.2






32 TSR1 Tsr1p 851499 YDL060W 3.8 2.2
 2.5
 1.6
 2.5
 2.8
 2.1
 2.5
33 ENT4 Ent4p 850621 YLL038C 3.8 2.2






34 TRM1 tRNA (guanine26-N2)-dimethyltransferase 851698 YDR120C 3.7 2.1
 -0.3
 0.3
 0.4
3.0
 1.6
 0.6
35 SAP185 Sap185p 853347 YJL098W 3.7 2.1
 0.5
-0.0
 0.4
-0.3
 1.5
-0.7
 0.3
-1.1
 -0.1
-0.3
 -0.1
-0.9
 1.6
0.2
36 TTI1 Tti1p 853834 YKL033W 3.7 2.1
 3.0
 2.5
 0.7
 0.7
 2.3
 1.7
 2.5
37 NOC4 ribosome biosynthesis protein NOC4 856267 YPR144C 3.6 2.1
 0.4
 0.9
 2.6
 3.0
 3.6
 2.6
 2.0
38 ARX1 putative hydrolase 851678 YDR101C 3.6 2.0
 0.8
 -0.6
 1.2
 2.5
 2.0
0.7
 0.1
 1.6
39 RIX1 Rix1p 856604 YHR197W 3.5 2.0






40 PUF6 Puf6p 852107 YDR496C 3.5 2.0
 1.0
 0.1
 2.4
 -0.2
 1.7
 1.2
 -0.0
41 TRM2 tRNA (uracil(54)-C(5))-methyltransferase 853930 YKR056W 3.5 2.0






42 SGD1 Sgd1p 851049 YLR336C 3.4 2.0
 0.8
 2.8
 2.6
 3.1
 1.6
 2.0
 2.3
43 URB1 Urb1p 853855 YKL014C 3.4 2.0
 2.2
 0.9
 2.3
 2.1
 3.8
 2.1
 2.0
44 IPI3 chromatin-binding/pre-rRNA-processing protein IPI3 855539 YNL182C 3.4 2.0
 0.7
 1.0
 1.2
 1.7
 1.3
 1.3
 0.3
45 NOG1 putative GTPase NOG1 856012 YPL093W 3.4 2.0
 1.4
 -0.3
 1.5
 0.7
 1.4
 2.3
 0.7
46 RRP6 exosome nuclease subunit RRP6 854162 YOR001W 3.4 2.0
 0.5
 2.0
 2.0
 -0.1
 2.4
 1.7
 -0.1
47 RIA1 GTPase RIA1 855558 YNL163C 3.4 1.9
 1.8
 0.7
 1.5
 2.8
 0.5
 -0.7
 0.3
48 UTP25 rRNA-binding ribosome biosynthesis protein UTP25 854717 YIL091C 3.4 1.9
 3.4
 1.5
 2.3
 4.2
 4.3
 3.7
 1.1
49 RCM1 rRNA (cytosine-C5-)-methyltransferase RCM1 855709 YNL022C 3.4 1.9
 1.5
 1.4
 1.7
 1.4
 3.1
 0.6
 0.9
50 POL3 DNA-directed DNA polymerase delta POL3 851456 YDL102W 3.3 1.9
 0.7
 0.9
 1.2
 0.7
 -0.1
 -0.4
 -0.9
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