Orthologous genes in OrthoFinder**

Species Gene Description
 sce-u.3   RRP40   exosome non-catalytic core subunit RRP40 
 sce-r.3   RRP40   exosome non-catalytic core subunit RRP40 
 hsa-u.4   EXOSC3   exosome component 3 
 mmu-u.4   Exosc3   exosome component 3 
 rno-u.3   Exosc3   exosome component 3 
 gga-u.3   EXOSC3   exosome component 3 
 dre-u.3   exosc3   exosome component 3 
 dme-u.3   Rrp40   Ribosomal RNA processing 40 
 cel-u.3   exos-3   Ribosomal RNA-processing protein 40 
 mcc-u.3   EXOSC3   exosome component 3 
 cfa-u.3   EXOSC3   exosome component 3 

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Top 50 coexpressed genes to RRP40 (sce-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sce3008   Ribosome biogenesis in eukaryotes  8 78 6.55
 sce3018   RNA degradation  5 61 3.77
 sce30   Pentose phosphate pathway  1 28 -
 sce240   Pyrimidine metabolism  1 32 -
 sce230   Purine metabolism  2 57 -

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sce:RRP40 (exosome non-catalytic core subunit RRP40) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

sce-u.3
for
RRP40
sce-r.3
for
RRP40
hsa-u.4
for
EXOSC3
mmu-u.4
for
Exosc3
rno-u.3
for
Exosc3
gga-u.3
for
EXOSC3
dre-u.3
for
exosc3
dme-u.3
for
Rrp40
cel-u.3
for
exos-3
mcc-u.3
for
EXOSC3
cfa-u.3
for
EXOSC3
1 DPH1 2-(3-amino-3-carboxypropyl)histidine synthase 854703 YIL103W 5.0 2.8
 -0.9
 -0.3
 -0.8
 2.5
 1.6
 -0.8
 2.0
 -0.9
 0.3
2 GCD1 translation initiation factor eIF2B subunit gamma 854434 YOR260W 4.7 2.7
 1.2
 1.5
 1.9
 0.8
 1.9
 2.7
 2.6
 0.8
 0.7
3 IKI1 Elongator subunit IKI1 856594 YHR187W 4.5 2.6








4 RRP4 exosome non-catalytic core subunit RRP4 856466 YHR069C 4.5 2.6
 4.6
 3.0
 2.4
 1.4
 2.5
 7.5
 4.5
 2.4
 2.3
5 RAT1 ssRNA exonuclease RAT1 854213 YOR048C 4.5 2.6
 0.4
 0.1
 0.0
 -0.5
 0.7
 1.5
 -0.6
 -0.1
 1.2
6 GPN2 putative GTPase GPN2 854436 YOR262W 4.5 2.5
 1.7
 4.2
 5.0
 2.3
 2.2
 0.9
 6.2
 2.7
 3.4
7 DIM1 putative dimethyladenosine transferase 855862 YPL266W 4.4 2.5
 2.6
 3.1
 2.5
 3.1
 1.9
 5.1
 2.1
 4.0
 3.3
8 RCM1 rRNA (cytosine-C5-)-methyltransferase RCM1 855709 YNL022C 4.4 2.5
 2.1
 1.7
 2.4
 2.5
 2.7
 2.9
 0.5
 2.1
 2.1
9 RRP46 exosome non-catalytic core subunit RRP46 852987 YGR095C 4.3 2.4
 0.2
 1.6
 1.3
 0.5
 4.4
 6.4
 6.8
 1.4
 0.8
10 GPN3 putative signal sequence-binding GTPase GPN3 850944 YLR243W 4.0 2.3
 3.3
 3.0
 3.2
 2.1
 1.0
 2.9
 3.3
 5.6
 3.1
11 RCL1 rRNA-processing endoribonuclease 854152 YOL010W 4.0 2.3
 3.8
 1.0
 2.0
 2.1
 2.9
 3.9
 5.1
 3.1
 0.7
12 TRM7 tRNA methyltransferase TRM7 852353 YBR061C 4.0 2.2
 1.1
 -0.4
 3.5
 1.4
 0.2
 1.6
0.9
 2.9
 0.9
 3.1
13 ELP4 Elongator subunit ELP4 856002 YPL101W 3.8 2.2
 0.4
 1.8
 0.5
 0.8
 2.3
 1.5
 0.9
 1.1
 1.8
14 RIO1 protein kinase RIO1 854286 YOR119C 3.8 2.2
 3.7
 1.8
 2.9
 1.4
 1.7
 0.6
 -0.4
 4.0
 1.4
15 EMG1 18S rRNA pseudouridine methyltransferase 850883 YLR186W 3.8 2.2
 3.8
 5.1
 6.7
 4.4
 1.1
 3.1
 7.1
 2.6
 5.1
16 SHQ1 Hsp90 cochaperone SHQ1 854702 YIL104C 3.8 2.1
 2.6
 3.2
 3.3
 2.7
 2.0
 0.5
 1.2
 1.7
 1.0
17 TRM44 tRNA (uracil) methyltransferase 856077 YPL030W 3.8 2.1
 2.0
 1.2
 1.0
 3.9
 -2.0
 2.3
 3.2
 2.9
 1.4
18 SHR3 Shr3p 851314 YDL212W 3.8 2.1








19 EFM2 S-adenosylmethionine-dependent methyltransferase 852574 YBR271W 3.7 2.1
 0.7
-1.0
 2.2
 1.3
 2.4
-0.1
 2.1
-0.2

2.3
-1.4
 0.0
-0.6
20 RSA1 Rsa1p 855908 YPL193W 3.7 2.1








21 IMP4 snoRNA-binding rRNA-processing protein IMP4 855649 YNL075W 3.7 2.1
 1.8
 2.0
 1.9
 2.4
 2.8
 2.4
 5.6
 2.8
 2.7
22 EFM1 protein-lysine N-methyltransferase 856346 YHL039W 3.7 2.1
 -0.7
 -0.8
 0.3
 0.1
 -0.4
 0.9
 -0.3
 -0.5
 -0.5
23 PRS2 ribose phosphate diphosphokinase subunit PRS2 856836 YER099C 3.7 2.1
 1.2
0.9
 3.7
0.1
 3.1
0.3
 -0.0
-0.9
 0.2
-2.0
 -0.1
 0.2
 1.1
1.1
 1.5
0.7
24 SOF1 rRNA-processing protein SOF1 850649 YLL011W 3.7 2.1
 3.5
 4.2
 3.1
 0.8
 2.0
 3.8
 0.8
 3.7
 2.3
25 ENP1 snoRNA-binding rRNA-processing protein ENP1 852549 YBR247C 3.7 2.1
 2.8
 2.2
 2.2
 1.6
 4.3
 2.8
 0.0
 2.8
 2.6
26 CWC24 U2-type spliceosomal complex subunit CWC24 851033 YLR323C 3.7 2.1
 0.7
 4.6
3.2
 4.1
1.3
 4.1
 1.7
 -0.3
 4.0
 1.5
 2.4
27 NOB1 rRNA-binding endoribonuclease 854221 YOR056C 3.7 2.1
 0.7
 2.5
 2.8
 3.1
 1.9
 3.6
 1.1
 4.9
 3.7
28 IPI1 Ipi1p 856485 YHR085W 3.7 2.1
 4.4
 0.9
 0.6
 2.8
 3.7
 5.1
 0.4
 4.4
 5.8
29 SFM1 protein-arginine N-methyltransferase SFM1 854186 YOR021C 3.7 2.1








30 YBR242W 5'-deoxynucleotidase 852544 YBR242W 3.7 2.1
 0.7
 -1.3
 1.6
 3.7
 -0.4
 -1.8
 0.7
 0.2
 0.4
31 PKR1 Pkr1p 855153 YMR123W 3.6 2.1








32 TAF6 TATA-binding protein-associated factor TAF6 852766 YGL112C 3.6 2.0
 -1.4
 -0.2
 -1.4
-0.9
 0.5
-1.3
 0.4
-0.2
 -0.0
 -0.3
33 BCP1 protein-transporting protein BCP1 851963 YDR361C 3.5 2.0
 5.0
 5.2
 3.8
 1.5
 3.1
 6.0
 3.3
 1.8
 3.7
34 SNU56 Snu56p 851827 YDR240C 3.5 2.0








35 BSC6 Bsc6p 853983 YOL137W 3.5 2.0








36 KTI11 Kti11p 852207 YBL071W-A 3.5 2.0
 1.9
 3.3
 2.2
 2.5
 -1.0
 3.8
 1.0
 1.5
 1.9
37 RPO31 DNA-directed RNA polymerase III core subunit RPO31 854283 YOR116C 3.5 2.0
 1.5
 -0.9
 -1.3
 1.2
 1.5
 2.2
 2.6
 -0.4
 1.1
38 NCS6 Ncs6p 852661 YGL211W 3.5 2.0
 1.5
 1.4
 2.7

4.0
 1.2
 2.9
39 GCD14 tRNA 1-methyladenosine methyltransferase subunit GCD14 853317 YJL125C 3.5 2.0
 2.2
 1.6
 2.1
 0.5
 1.4
 7.3
 2.1
 2.7
 1.4
40 CFD1 iron-sulfur cluster assembly protein CFD1 854814 YIL003W 3.4 2.0
 -0.1
 1.2
 0.6
 2.0
 1.0
 1.8
2.7
 0.9
41 NSA1 ribosome biosynthesis protein NSA1 852767 YGL111W 3.4 1.9
 1.7
 2.4
 3.0
3.7
 2.1
 1.6
 2.8
 4.6
42 FAP1 Fap1p 855708 YNL023C 3.4 1.9
 2.6
 -1.1
 1.1
 0.6
 1.5
 -1.0
 0.7
 0.5
 3.3
43 BRE2 Bre2p 850702 YLR015W 3.4 1.9
 0.1
 2.0
 2.1
 3.1
 -0.7
 -1.1
 -0.2
 0.5
 1.4
44 RIO2 protein kinase RIO2 855514 YNL207W 3.4 1.9
 1.5
 2.1
 2.1
 2.3
 2.6
 3.0
 1.6
 5.3
 1.4
45 NMD3 ribosome-binding protein NMD3 856575 YHR170W 3.4 1.9
 -0.7
 1.7
 1.7
 1.5
 1.8
 6.2
 3.1
 2.7
 2.0
46 CSL4 exosome non-catalytic core subunit CSL4 855489 YNL232W 3.4 1.9
 1.1
 4.0
 4.0
 1.1
 1.8
 3.0
 1.8
 2.3
 2.0
47 YBL071C uncharacterized protein 852208 YBL071C 3.3 1.9








48 CCA1 tRNA adenylyltransferase 856915 YER168C 3.3 1.9
 3.9
 1.2
 1.7
 3.5
 -0.3
 0.8
 3.0
 2.0
 2.0
49 SKI6 exosome non-catalytic core subunit SKI6 853109 YGR195W 3.2 1.8
 3.2
 3.3
 3.3
 0.8
 4.5
 6.2
 0.4
 4.2
 2.1
50 ANP1 Anp1p 856675 YEL036C 3.2 1.8








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