Orthologous genes in OrthoFinder**

Species Gene Description
 sce-u.3   PRP9   SF3a splicing factor complex subunit PRP9 
 sce-r.3   PRP9   SF3a splicing factor complex subunit PRP9 
 sce-m.4   PRP9   SF3a splicing factor complex subunit PRP9 
 spo-u.3   rad16   DNA repair endonuclease XPF 
 hsa-u.4   SF3A3   splicing factor 3a subunit 3 
 mmu-u.4   Sf3a3   splicing factor 3a, subunit 3 
 rno-u.3   Sf3a3   splicing factor 3a, subunit 3 
 gga-u.3   SF3A3   splicing factor 3a subunit 3 
 dre-u.3   sf3a3   splicing factor 3a, subunit 3 
 dme-u.3   noi   noisette 
 cel-u.3   T13H5.4   Matrin-type domain-containing protein 
 mcc-u.3   SF3A3   splicing factor 3a subunit 3 
 cfa-u.3   SF3A3   splicing factor 3a subunit 3 

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Top 50 coexpressed genes to PRP9 (sce-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sce3040   Spliceosome  7 78 5.38
 sce3015   mRNA surveillance pathway  2 48 -
 sce3018   RNA degradation  3 64 -
 sce4111   Cell cycle - yeast  3 130 -
 sce4113   Meiosis - yeast  4 133 -

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sce:PRP9 (SF3a splicing factor complex subunit PRP9) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

sce-u.3
for
PRP9
sce-r.3
for
PRP9
sce-m.4
for
PRP9
spo-u.3
for
rad16
hsa-u.4
for
SF3A3
mmu-u.4
for
Sf3a3
rno-u.3
for
Sf3a3
gga-u.3
for
SF3A3
dre-u.3
for
sf3a3
dme-u.3
for
noi
cel-u.3
for
T13H5.4
mcc-u.3
for
SF3A3
cfa-u.3
for
SF3A3
1 RRP45 exosome non-catalytic core subunit RRP45 851874 YDR280W 5.5 3.7
 1.7
 0.9
 5.5
 6.0
 4.9
 3.5
 2.5
 3.4
 4.6
 3.7
 2.1
2 PRP2 DEAH-box RNA-dependent ATPase PRP2 855745 YNR011C 5.4 3.3
 1.9
3.4
3.2
 4.7
3.6
 4.9
4.3
 4.7
3.3
 7.0
5.4
 7.2
4.2
 6.7
6.6
 2.4
2.3
 2.7
2.0
3 TFC6 transcription factor TFIIIC subunit TFC6 851964 YDR362C 5.3 2.0
 3.1









4 HIR1 Hir1p 852275 YBL008W 5.2 3.0

0.7
 1.1
 2.0
 2.1
 -0.4
 2.5
 4.5
 0.4
 1.3
5 SNU56 Snu56p 851827 YDR240C 4.9 2.8
 1.9









6 RAD28 Rad28p 851594 YDR030C 4.8 2.5
 2.1
 1.8
 0.0
 2.3
 1.4
 0.1
 1.1
0.7
 0.3
 -0.3
7 PRP31 U4/U6-U5 snRNP complex subunit PRP31 852983 YGR091W 4.7 1.6
 2.9
 2.4
 6.9
 7.2
 5.9
5.8
 5.5
 7.9
 2.4
 4.0
8 PPH3 phosphoprotein phosphatase PP4 catalytic subunit PPH3 851647 YDR075W 4.3 2.2
 2.0
2.0
1.5
 4.5
1.4
 2.5
1.4
 3.7
3.7
 2.6
2.2
 6.7
2.4
 2.6
1.7
 3.3
1.8
 3.0
0.1
9 BUB1 protein kinase BUB1 853100 YGR188C 4.3 1.9
 2.2
 0.9
 0.0
 -0.8
 0.7
 -0.0
 -1.0
 0.9
0.5
 3.4
 0.6
 0.7
10 CDC23 anaphase promoting complex subunit CDC23 856571 YHR166C 4.3 2.1
 2.1
 -0.7
 3.2
 3.8
 2.0
 2.5
 0.9
 2.2
 2.7
 4.6
 1.3
11 RNH70 Rnh70p 853193 YGR276C 4.3 2.3
 1.9
1.0
 -1.3
1.9
1.6
 2.3
 1.0
 0.7
12 CDC40 Cdc40p 851968 YDR364C 4.2 2.3
 1.8
 0.8
 1.2
 1.5
 1.5
 1.9
 3.5
7.3
0.8
 2.1
 0.4
13 MUD2 Mud2p 853788 YKL074C 4.1 2.4
 1.6









14 SYF1 mRNA splicing protein SYF1 852025 YDR416W 4.0 1.9
 1.9
 -0.7
 3.4
 4.0
 3.3
 2.4
 4.9
 4.3
 8.9
 2.5
 0.4
15 URC2 Urc2p 852133 YDR520C 4.0 1.8
 2.0









16 DRN1 Drn1p 852985 YGR093W 3.8 1.9
 1.8
 0.8
 3.9
 4.1
 1.6
 3.5
 3.1
 2.1
 3.9
 1.8
 1.8
17 RCM1 rRNA (cytosine-C5-)-methyltransferase RCM1 855709 YNL022C 3.8 1.9
 1.8
 -0.2
 2.2
 2.2
 2.1
 0.6
 1.3
 2.9
 2.0
 1.2
 1.9
18 CTK3 Ctk3p 854928 YML112W 3.7 2.1
 1.6









19 OMA1 metalloendopeptidase 853962 YKR087C 3.7 2.1

1.2
 -0.2
 -0.4
 1.3
 -1.1

0.3
 1.0
20 MEC3 Mec3p 850995 YLR288C 3.7 2.2
 1.4









21 RAD30 DNA-directed DNA polymerase eta 852028 YDR419W 3.7 2.0
 1.6
1.1
 0.3
 1.4
 0.2
 -0.1
 -1.5
 1.5
 1.3
 1.5
22 CTR86 Ctr86p 850421 YCR054C 3.7 1.9
 1.7
 0.7
 1.4
 0.3
 1.7
 0.1
 -0.3

1.7
 -0.4
23 YDR444W putative hydrolase 852054 YDR444W 3.6 2.5
 1.1









24 MDM30 SCF ubiquitin ligase complex subunit MDM30 851083 YLR368W 3.6 2.2
 1.3









25 TGS1 RNA methyltransferase 855946 YPL157W 3.6 2.3
 1.2
 1.7
 3.1
 3.4
 3.1
 3.7
 3.4
3.4
 4.1
 2.3
26 AVO1 Avo1p 854076 YOL078W 3.5 1.3
 2.2
 1.2
 0.6
 1.4
 -0.4
 1.3
 -1.0
 0.1
 -0.5
 0.1
 1.1
27 RSC58 Rsc58p 850720 YLR033W 3.4 1.9
 1.5









28 UTP30 Utp30p 853934 YKR060W 3.4 1.8
 1.5
 0.1
 4.8
 7.2
3.8
 0.6
 2.5
 4.4
 6.4
 4.2
29 HSH155 U2 snRNP complex subunit HSH155 855332 YMR288W 3.4 0.9
 2.3
 -0.2
 2.9
 2.2
 1.6
 1.6
6.6
 4.5
 0.7
 1.4
30 RRP43 exosome non-catalytic core subunit RRP43 850401 YCR035C 3.4 2.0
 1.3









31 NTO1 Nto1p 856143 YPR031W 3.4 1.8
 1.5
 0.7
 3.6
-0.5
 1.8
1.3
 2.8
-0.2
 0.9
0.7
 0.8
0.8
 1.3
 1.7
 2.5
1.0
 1.3
0.3
32 DPI35 Dpi35p 855160 YMR130W 3.3 2.4
 0.9
-2.1
 0.6
 0.1
 -1.0
 -1.6
 -0.6
-0.8
 0.7
 -0.2
 0.1
33 PAC2 Pac2p 856724 YER007W 3.3 2.0
 1.3
 1.5
 2.0
 1.3
 3.8
 2.5
 1.6
 1.9
 2.2
 -0.4
 1.4
34 TPK3 cAMP-dependent protein kinase catalytic subunit TPK3 853688 YKL166C 3.3 1.9
 1.3
 0.2
-0.7
 0.1
0.1
 0.5
-0.7
 -0.0
-1.3
 0.2
-0.7
 1.1
0.4
 -0.2
-0.2
 0.7
-1.6
 1.2
-0.2
 -0.8
-1.0
35 KIN28 TFIIH complex serine/threonine-protein kinase subunit KIN28 851450 YDL108W 3.3 1.9
 1.4
 -1.4
 0.8
 2.5
 3.8
 2.8
 1.5
 1.0
 2.6
 3.6
 0.8
36 TSR3 ribosome biogenesis protein TSR3 854167 YOR006C 3.3 2.0
 1.3
 1.6
 -1.4
 3.1
 1.5
 3.0
 1.5
 1.3
 1.5
 1.7
 1.7
37 CIA1 iron-sulfur cluster assembly protein CIA1 851860 YDR267C 3.3 1.5
 1.8









38 RKM2 protein-lysine N-methyltransferase 851779 YDR198C 3.3 1.7
 1.5
 0.3
 -0.1
 -0.5
 2.9
 0.7
 0.5
 0.4
 1.6
 0.9
 1.0
39 FAL1 ATP-dependent RNA helicase FAL1 851584 YDR021W 3.2 1.8
 1.4
4.3
-0.2
 8.2
4.9
 7.2
5.3
 5.7
2.3
 4.9
2.2
 7.6
1.9
 4.3
1.2
 6.7
4.1
 4.1
2.8
40 REF2 RNA-processing protein REF2 851776 YDR195W 3.2 1.4
 1.8









41 HAP3 Hap3p 852260 YBL021C 3.2 1.7
 1.4
 -0.1
 -0.5
 3.0
 2.2
 3.7
 3.5
1.2
 1.4
 0.2
 1.1
 0.9
42 PUS9 pseudouridine synthase PUS9 851525 YDL036C 3.2 1.8
-0.1
 1.6
 0.1
 1.4
 2.9
 0.7
 2.1
-1.0
 0.6
 2.2
 2.1
43 TRF5 non-canonical poly(A) polymerase TRF5 855417 YNL299W 3.2 1.8
1.6
1.1
 -0.7
-0.9
 1.2
-0.8
 1.1
-0.8
 1.2
0.8
 1.0
0.5
 -0.6
-0.8
 0.5
 1.3
-0.1
 0.2
-0.1
44 IBD2 Ibd2p 855557 YNL164C 3.1 1.1
 2.0









45 BUD32 serine/threonine protein kinase BUD32 853178 YGR262C 3.1 2.0
 1.1
0.4
 0.9
0.8
 1.9
0.6
 0.5
 1.1
 0.9
 1.9
 0.3
 2.8
46 PNO1 Pno1p 854317 YOR145C 3.1 1.7
 1.3
 -0.1
 2.2
 1.0
 1.9
 1.9
 0.5
 0.2
 1.4
 2.6
 1.7
47 CDC123 cell proliferation protein CDC123 850912 YLR215C 3.1 1.9
 1.1
6.4
 3.6
 3.1
 2.7
 1.8

2.3
 1.7
48 BRE1 E3 ubiquitin-protein ligase BRE1 851485 YDL074C 3.0 0.8
 2.2
4.3
2.4
 2.9
1.2
 4.1
1.1
 3.6
 2.8
1.6
 3.5
 5.8
 4.7
2.8
 1.6
-0.4
49 MOD5 tRNA dimethylallyltransferase 854448 YOR274W 3.0 1.4
 1.6
 1.0
 5.5
 -0.2
 1.7
 0.9
1.4
 3.5
 3.1
 3.5
50 HIT1 Hit1p 853516 YJR055W 3.0 1.5
 1.5
-0.2
 1.8
 2.1
-0.3
 -2.2
0.7
 2.0
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