Orthologous genes in OrthoFinder**

Species Gene Description
 sce-u.3   MSH3   mismatch repair protein MSH3 
 sce-r.3   MSH3   mismatch repair protein MSH3 
 hsa-u.4   MSH3   mutS homolog 3 
 mmu-u.4   Msh3   mutS homolog 3 
 rno-u.3   Msh3   mutS homolog 3 
 gga-u.3   MSH3   mutS homolog 3 
 dre-u.3   msh3   mutS homolog 3 (E. coli) 
 mcc-u.3   MSH3   mutS homolog 3 
 cfa-u.3   MSH3   mutS homolog 3 

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Top 50 coexpressed genes to MSH3 (sce-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sce3018   RNA degradation  3 64 -
 sce3013   Nucleocytoplasmic transport  3 65 -
 sce4144   Endocytosis  3 79 -
 sce3040   Spliceosome  2 81 -
 sce4138   Autophagy - yeast  2 90 -

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sce:MSH3 (mismatch repair protein MSH3) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

sce-u.3
for
MSH3
sce-r.3
for
MSH3
hsa-u.4
for
MSH3
mmu-u.4
for
Msh3
rno-u.3
for
Msh3
gga-u.3
for
MSH3
dre-u.3
for
msh3
mcc-u.3
for
MSH3
cfa-u.3
for
MSH3
1 CMR2 Cmr2p 854260 YOR093C 6.9 3.9
 0.1
 -0.2
-0.2
 0.7
-0.4
 1.7
0.1
 1.6
0.0
 1.6
1.5
 1.0
-0.5
2 BPH1 Bph1p 850398 YCR032W 5.3 3.0
 1.7
 0.1
-0.6
 0.7
0.1
 -0.5
-1.0
 1.4
 2.1
0.1
 1.0
-0.5
3 MET18 Met18p 854678 YIL128W 5.3 3.0
 0.2
 2.0
 2.0
 -0.5
 3.5
 1.2
 0.2
4 HIR2 Hir2p 854203 YOR038C 4.9 2.8
 -0.4
 2.6
 0.1
 0.7
 0.3
 0.5
 0.2
5 LAM1 Lam1p 856560 YHR155W 4.8 2.7






6 TAF2 Taf2p 850409 YCR042C 4.8 2.7
 0.8
 1.9
 0.9
 2.2
 1.5
 -0.2
 1.3
7 CHL1 DNA helicase 856099 YPL008W 4.6 2.6
 -0.1
 2.3
 1.3
 0.2
 -0.2
 -0.2
 -0.7
8 PRP2 DEAH-box RNA-dependent ATPase PRP2 855745 YNR011C 4.6 2.6
 0.7
0.3
 2.1
1.7
 1.9
1.6
 1.2
1.0
 2.2
1.2
 3.6
1.0
 4.0
0.4
9 TMN3 Tmn3p 856849 YER113C 4.5 2.5






10 RKR1 ubiquitin-protein ligase RKR1 855289 YMR247C 4.4 2.5
 1.3
 2.0
 3.0
 2.1
 2.3
 2.2
 1.5
11 ITC1 Itc1p 852744 YGL133W 4.4 2.5






12 HIR3 Hir3p 853605 YJR140C 4.4 2.5






13 NUT1 Nut1p 852726 YGL151W 4.3 2.4






14 RCY1 Rcy1p 853226 YJL204C 4.1 2.3






15 YML096W putative asparagine synthase 854877 YML096W 4.0 2.3
 -0.7
 2.1
1.6
 0.3
 0.8
 1.4
16 RIB2 bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 854088 YOL066C 4.0 2.3
 -1.2
 0.0
 -0.6
 -0.4
 0.3
 -0.8
 -0.5
17 NMD5 Nmd5p 853596 YJR132W 4.0 2.3
 3.2
1.8
 2.4
0.3
 1.9
0.1
 2.3
1.9
 0.0
-0.2
 1.9
0.7
 2.9
1.3
18 MMS22 Mms22p 851030 YLR320W 4.0 2.3






19 TOF1 Tof1p 855448 YNL273W 3.9 2.2






20 GEA2 Arf family guanine nucleotide exchange factor GEA2 856691 YEL022W 3.9 2.2
 1.0
 -0.0
 0.2
 -0.7
 1.7
 0.8
 -0.6
21 LAA1 Laa1p 853223 YJL207C 3.8 2.2
 2.2
0.8
 0.9
-0.0
 1.4
0.3
 0.8
0.5
 1.7
-0.2
 2.5
2.1
 1.2
1.1
22 COG3 Golgi transport complex subunit COG3 856901 YER157W 3.8 2.2
 -0.3
 -0.6
 0.4
 1.0
 0.2
 0.7
 1.4
23 DCK1 Dck1p 851141 YLR422W 3.8 2.2
 1.9
1.5
 1.1
0.6
 2.4
0.4
 1.1
0.3
 2.3
1.0
 2.4
1.2
 1.2
0.4
24 YSH1 cleavage polyadenylation factor subunit YSH1 850983 YLR277C 3.8 2.2
 2.8
 1.1
 2.4
 1.9
 0.9
 0.3
 0.1
25 OAF3 Oaf3p 853938 YKR064W 3.8 2.2






26 DNF3 aminophospholipid-translocating P4-type ATPase DNF3 855197 YMR162C 3.7 2.1
 1.3
1.0
 1.4
1.3
 1.4
1.3
 1.2
0.4
 1.5
1.4
 3.2
2.5
 0.4
0.3
27 RGD2 GTPase-activating protein RGD2 850497 YFL047W 3.7 2.1






28 CYM1 Cym1p 852041 YDR430C 3.6 2.1
 0.3
 2.1
 0.2
 3.2
 3.5
 2.3
 2.3
29 SEC8 exocyst subunit SEC8 856168 YPR055W 3.6 2.1
-1.0
 2.2
 0.1
 3.0
 4.8
 -0.4
30 GEA1 Arf family guanine nucleotide exchange factor GEA1 853488 YJR031C 3.6 2.1
 1.0
 -0.0
 0.2
 -0.7
 1.7
 0.8
 -0.6
31 RPB2 DNA-directed RNA polymerase II core subunit RPB2 854322 YOR151C 3.6 2.1
 0.5
 3.0
 4.8
 1.4
 -1.0
 0.2
 1.4
32 KAP104 Kap104p 852305 YBR017C 3.5 2.0
 2.8
-0.7
 0.7
0.3
 0.3
0.2
 2.6
-0.0
 2.2
1.2
 3.3
-1.4
 3.2
-1.2
33 NUP85 Nup85p 853499 YJR042W 3.5 2.0






34 PRP22 DEAH-box ATP-dependent RNA helicase PRP22 856732 YER013W 3.5 2.0
 0.7
0.3
 2.1
1.7
 1.9
1.6
 1.2
1.0
 2.2
1.2
 3.6
1.0
 4.0
0.4
35 UFD4 putative ubiquitin-protein ligase UFD4 853859 YKL010C 3.5 2.0
 0.9
 2.8
 2.7
 1.1
 0.6
 0.6
 1.3
36 TRS130 transport protein particle complex II subunit TRS130 855258 YMR218C 3.5 2.0
 0.7
 -0.4
 -0.6
 0.8
 0.8
 2.3
 -0.6
37 RGR1 Rgr1p 850760 YLR071C 3.5 2.0
 2.0
 1.4
 0.8
0.7
 -0.9
 1.1
 0.5
 0.8
38 ACF2 endo-1,3(4)-beta-glucanase 850836 YLR144C 3.4 1.9






39 PSD2 phosphatidylserine decarboxylase 2 853080 YGR170W 3.4 1.9






40 GBP2 single-stranded telomeric DNA-binding/mRNA-binding protein 850346 YCL011C 3.4 1.9






41 YPK9 putative acid anhydride hydrolase 854466 YOR291W 3.4 1.9
 0.0
-0.1
 0.7
-0.3
 -0.8
-0.9
 1.1
0.8
 0.0
-0.5
 1.0
0.4
 0.6
0.1
42 VPS41 Vps41p 851653 YDR080W 3.3 1.9
 2.4
 3.3
 1.4
 1.9
 0.3
 3.4
 1.2
43 SKI2 SKI complex RNA helicase subunit SKI2 851114 YLR398C 3.3 1.9
 6.2
0.4
 3.0
1.3
 3.2
2.8
 9.3
0.6
 2.7
1.9
 2.3
0.5
 3.9
-0.4
44 GCN2 serine/threonine-protein kinase GCN2 851877 YDR283C 3.3 1.9
 1.8
 1.6
 4.4
 1.4
 1.0
 2.5
 3.4
45 CDC39 CCR4-NOT core subunit CDC39 850455 YCR093W 3.3 1.9
 2.0
 2.8
 4.8
 -0.6
 0.4
 1.2
 1.5
46 YPT31 Rab family GTPase YPT31 856753 YER031C 3.3 1.9
 1.3
-0.2
 -0.7
-2.3
 -0.2
-0.4
 0.7
-0.9
 -0.1
-0.3
 1.2
0.1
 -1.1
-2.0
47 TTI1 Tti1p 853834 YKL033W 3.3 1.9
 1.5
 1.5
 3.3
 0.3
 2.3
 0.9
 0.1
48 SKI3 SKI complex subunit tetratricopeptide repeat protein SKI3 856319 YPR189W 3.3 1.9
 5.2
 1.3
 3.3
 5.0
 2.6
 3.6
 2.9
49 CTF18 Ctf18p 855102 YMR078C 3.3 1.9
 0.3
 1.5
 2.1
 0.2
 3.3
 -0.1
 0.5
50 RTC5 Rtc5p 854285 YOR118W 3.3 1.9






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