Orthologous genes in OrthoFinder**

Species Gene Description
 hsa-u.4   HOXA9   homeobox A9 
 hsa-r.6   HOXA9   homeobox A9 
 hsa-m2.4   HOXA9   homeobox A9 
 hsa-u.4   HOXD9   homeobox D9 
 hsa-u.4   HOXC9   homeobox C9 
 hsa-u.4   HOXB9   homeobox B9 
 mcc-u.3   HOXB9   homeobox B9 
 mcc-u.3   HOXC9   homeobox C9 
 mcc-u.3   HOXD9   homeobox D9 
 mmu-u.4   Hoxd9   homeobox D9 
 mmu-u.4   Hoxc9   homeobox C9 
 mmu-u.4   Hoxb9   homeobox B9 
 rno-u.3   Hoxa9   homeobox A9 
 rno-u.3   Hoxc9   homeobox C9 
 cfa-u.3   HOXC9   homeobox C9 
 cfa-u.3   HOXD9   homeobox D9 
 cfa-u.3   HOXA9   homeobox A9 
 gga-u.3   HOXD9   homeobox D9 
 gga-u.3   HOXB9   homeobox B9 
 gga-u.3   HOXA9   homeobox A9 
 dre-u.3   hoxc10a   homeobox C10a 
 dre-u.3   hoxd9a   homeobox D9a 
 dre-u.3   hoxa9a   homeobox A9a 
 dme-u.3   Abd-B   Abdominal B 
 cel-u.3   php-3   Homeobox domain-containing protein 

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Top 50 coexpressed genes to HOXA9 (hsa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 hsa4146   Peroxisome  1 82 -
 hsa4350   TGF-beta signaling pathway  1 94 -
 hsa4550   Signaling pathways regulating pluripotency of stem cells  2 143 -
 hsa5202   Transcriptional misregulation in cancer  3 192 -
 hsa5205   Proteoglycans in cancer  2 205 -

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hsa:HOXA9 (homeobox A9) External Links;


Show/Hide Columns:          
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID CoexPub LINK Target Reference

hsa-u.4
for
HOXA9
hsa-r.6
for
HOXA9
hsa-m2.4
for
HOXA9
hsa-u.4
for
HOXD9
hsa-u.4
for
HOXC9
hsa-u.4
for
HOXB9
mcc-u.3
for
HOXB9
mcc-u.3
for
HOXC9
mcc-u.3
for
HOXD9
mmu-u.4
for
Hoxd9
mmu-u.4
for
Hoxc9
mmu-u.4
for
Hoxb9
rno-u.3
for
Hoxa9
rno-u.3
for
Hoxc9
cfa-u.3
for
HOXC9
cfa-u.3
for
HOXD9
cfa-u.3
for
HOXA9
gga-u.3
for
HOXD9
gga-u.3
for
HOXB9
gga-u.3
for
HOXA9
dre-u.3
for
hoxc10a
dre-u.3
for
hoxd9a
dre-u.3
for
hoxa9a
dme-u.3
for
Abd-B
cel-u.3
for
php-3
1 HOXA6 homeobox A6 3203 22 21.8 21.4
 16.9
 7.4
6.2
 8.5
8.3
 17.1
6.0
 2.6
 1.7
 2.5
 9.3
8.8
 10.2
9.8
 17.1
10.2
 6.1
 6.6
 4.0
2.9
 2.9
2.8
 7.0
2.7
 5.1
4.6
 9.1
2.9
 8.8
6.9
 3.0
2.7
 5.1
4.6
 6.0
4.5

2 HOXA10 homeobox A10 3206 54 21.5 23.9
 14.0
 8.3
 7.9
 5.9
 3.3
 4.4
 4.7
 14.2
 14.4
 10.2
 19.2
 8.8
 6.3
 1.7
 11.8
 6.1
 5.6
 8.9
 11.3
 13.2
 12.1

3 HOXA11 homeobox A11 3207 44 18.5 18.4
 14.0
 7.6
 7.1
 6.0


12.2
 11.7
 8.7
 14.3
 8.5
 1.6
 1.9
 6.3
 6.5
 3.3
 9.5
 10.5
 9.4
 8.4

4 HOXA11-AS HOXA11 antisense RNA 221883 3 16.8 16.9






















5 HOXA5 homeobox A5 3202 27 16.7 15.7
 13.6
 6.8
6.1
 7.8
7.8
 15.3
5.3
 3.0
2.8
 2.6
2.4
 4.5
3.1
 6.6
5.5
 6.4
5.9
 11.6
7.0
 8.9
4.7
 5.1
3.8
 5.8
2.2
 3.0
1.9
 6.0
3.0
 3.9
3.8
 4.1
3.4
 6.7
3.1
 1.6
1.4
 3.6
1.9
 5.8
3.3

6 HOXA4 homeobox A4 3201 24 13.3 12.5
 10.8
 19.8
5.5
 15.9
7.4
 9.4
6.6
 2.6
2.4
 4.0
2.2
 2.3
1.5
 19.2
10.1
 14.3
9.8
 11.6
9.9
 6.1
4.2
 14.1
3.5
 6.2
4.9
 7.4
2.4
 3.8
2.9
 5.7
4.2
 5.4
4.0
 5.5
3.7
 2.9
2.0
 7.4
4.6
 6.0
4.7
 1.9
 2.3
7 HOXA3 homeobox A3 3200 17 12.6 13.1
 9.0
 5.2
 6.3
 4.7
 2.7
 3.2
 4.0
 5.3
 5.0
 7.2
 5.7
 3.3
 3.2
 1.8
 4.3
 5.0
 3.6
 4.7
 3.9
 4.3
 5.6

8 HOXA2 homeobox A2 3199 12 11.0 9.4
 9.9
 3.6
3.1
 4.5
4.4
 7.0
3.6
 1.9
1.5
 2.8
1.3
 2.5
1.0
 6.0
3.7
 5.0
3.9
 8.1
5.6
 2.9
 2.0
 2.1
 0.2
 1.2
 3.3
2.6
 2.5
2.0
 2.8
2.2
 1.9
0.5
 4.7
1.6
 4.0
2.5
 0.7
9 HOXA13 homeobox A13 3209 37 8.1 8.9
 5.3
 6.6
 4.4
 4.5







4.6
 5.1
 3.6
 4.6
 3.3
 6.3
 8.8
5.8
 7.5
5.4
 6.3
6.2

10 HOXB6 homeobox B6 3216 21 8.0 6.8
 7.4
 7.4
6.2
 8.5
8.3
 17.1
6.0
 2.6
 1.7
 2.5
 9.3
8.8
 10.2
9.8
 17.1
10.2
 6.1
 6.6
 4.0
2.9
 2.9
2.8
 7.0
2.7
 5.1
4.6
 9.1
2.9
 8.8
6.9
 3.0
2.7
 5.1
4.6
 6.0
4.5

11 HOXD10 homeobox D10 3236 0 7.8 6.2
 7.5
 24.4
 7.7
 6.4


27.8
 12.4
 10.2
 7.7
 9.2
 1.2
 8.5
 3.9
 11.7
 5.5
 5.1
 12.0
 19.6
 11.4

12 HOXC10 homeobox C10 3226 0 7.6 7.0
 6.4
 9.0
 24.7
 6.1
 1.7
 11.9
 3.2
 14.7
 24.6
 11.8
 9.9
 18.2
 13.5
 1.6
 3.7
 5.0
 7.8
 6.2




13 HOXD11 homeobox D11 3237 0 7.6 6.0
 7.4
 21.2
 6.9
 6.5


12.2
 9.3
 8.2




7.7
 4.1
 5.8
 13.7
6.7
 15.0
5.4
 11.1
5.0

14 HOXC9 homeobox C9 3225 0 7.5 6.6
 6.5
 9.0
7.1
 9.0
7.5
 7.3
7.1
 4.0
3.2
 4.9
3.2
 4.9
4.6
 13.0
12.3
 15.1
13.1
 13.1
11.7
 10.4
6.6
 10.4
9.1
 6.3
3.2
 3.2
2.0
 6.3
3.4
 6.1
5.6
 5.7
5.5
 7.9
6.1
 14.4
11.9
 15.6
11.7
 14.7
12.8

15 HOXC6 homeobox C6 3223 0 7.3 6.6
 6.2
 8.1
 25.9
 6.7


10.1
 24.2
 11.0
 9.3
 16.1
 10.7
 1.8
 3.7


5.4
4.8
 7.8
6.0
 9.2
7.0

16 HOXB5 homeobox B5 3215 0 7.2 6.0
 6.8
 6.8
6.1
 7.8
7.8
 15.3
5.3
 3.0
2.8
 2.6
2.4
 4.5
3.1
 6.6
5.5
 6.4
5.9
 11.6
7.0
 8.9
4.7
 5.1
3.8
 5.8
2.2
 3.0
1.9
 6.0
3.0
 3.9
3.8
 4.1
3.4
 6.7
3.1
 1.6
1.4
 3.6
1.9
 5.8
3.3

17 HOXA1 homeobox A1 3198 29 7.0 7.6
 4.7
 8.7
3.7
 5.7
2.6
 4.5
4.3


3.6
 3.1
 4.3




2.3
1.3
 1.2
-0.1
 2.3
1.5
 3.4
 4.2
 5.6
 0.5
 1.5
18 HOXD9 homeobox D9 3235 0 6.9 6.4
 5.8
 9.0
7.1
 9.0
7.5
 7.3
7.1
 4.0
3.2
 4.9
3.2
 4.9
4.6
 13.0
12.3
 15.1
13.1
 13.1
11.7
 10.4
6.6
 10.4
9.1
 6.3
3.2
 3.2
2.0
 6.3
3.4
 6.1
5.6
 5.7
5.5
 7.9
6.1
 14.4
11.9
 15.6
11.7
 14.7
12.8

19 HOXB7 homeobox B7 3217 0 6.6 5.1
 6.5
 7.1
 9.6
 15.3
 3.2
2.7
 3.9
2.0
 3.2
2.8
 7.7
6.0
 11.7
7.2
 11.4
8.1
 11.4
4.7
 10.2
5.5
 7.2
2.1
 3.2
2.5
 8.0
2.6
 5.1
4.8
 5.0
4.3
 10.8
6.0
 6.8
 8.6
 9.9
2.9
20 HOXC8 homeobox C8 3224 0 6.5 5.8
 5.7
 8.7
 26.6
 6.8


11.4
 22.7
 12.3
 11.5
 22.1
 9.3
 2.5
 3.2
 3.8
 5.6
 5.7
 7.4
 7.3
 10.1

21 HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 100506311 0 6.5 6.5






















22 HOXB8 homeobox B8 3218 10 6.4 6.6
 4.6
 7.6
 8.3
 23.7


10.8
 12.5
 24.9
 5.6
 6.3
 1.5
 3.4
 4.1
 4.8
 7.5
 4.2
 4.1
3.4
 3.8
3.6
 5.5
5.4
 13.0
7.4
 4.2
1.5
23 HOXD4 homeobox D4 3233 0 6.0 6.5
 4.1
 19.8
5.5
 15.9
7.4
 9.4
6.6
 2.6
2.4
 4.0
2.2
 2.3
1.5
 19.2
10.1
 14.3
9.8
 11.6
9.9
 6.1
4.2
 14.1
3.5
 6.2
4.9
 7.4
2.4
 3.8
2.9
 5.7
4.2
 5.4
4.0
 5.5
3.7
 2.9
2.0
 7.4
4.6
 6.0
4.7
 1.9
 2.3
24 HOXC11 homeobox C11 3227 0 5.9 5.7
 4.8
 6.4
 18.5
 4.6





8.6
 16.4





19.9
9.7
 9.9
6.2
 9.9
5.6

25 HOXB3 homeobox B3 3213 0 5.6 4.4
 5.5
 4.8
 5.1
 10.7
 3.5
 2.2
 3.1
 6.3
 5.3
 9.9
 3.5
 4.2
 1.7
 0.6
 2.7
 2.9
 2.1
 2.2
 0.7
 2.4
 3.0

26 HOTAIR HOX transcript antisense RNA 100124700 0 5.6 5.6






















27 HOXB9 homeobox B9 3219 0 5.3 4.7
 4.6
 9.0
7.1
 9.0
7.5
 7.3
7.1
 4.0
3.2
 4.9
3.2
 4.9
4.6
 13.0
12.3
 15.1
13.1
 13.1
11.7
 10.4
6.6
 10.4
9.1
 6.3
3.2
 3.2
2.0
 6.3
3.4
 6.1
5.6
 5.7
5.5
 7.9
6.1
 14.4
11.9
 15.6
11.7
 14.7
12.8

28 HOXD8 homeobox D8 3234 0 5.2 5.1
 4.2
 22.4
 9.2
 5.9
 3.3
 4.9
 9.1
 27.9
 10.3
 11.0
 4.6
 6.1
 3.3
 12.0
 2.2
 10.3
 4.0
 4.9




29 HOXB4 homeobox B4 3214 0 5.1 4.5
 4.6
 19.8
5.5
 15.9
7.4
 9.4
6.6
 2.6
2.4
 4.0
2.2
 2.3
1.5
 19.2
10.1
 14.3
9.8
 11.6
9.9
 6.1
4.2
 14.1
3.5
 6.2
4.9
 7.4
2.4
 3.8
2.9
 5.7
4.2
 5.4
4.0
 5.5
3.7
 2.9
2.0
 7.4
4.6
 6.0
4.7
 1.9
 2.3
30 ZNF503 zinc finger protein 503 84858 0 5.0 5.6
 3.2
 3.1
2.2
 3.1
2.1
 2.4
2.3
 1.1
0.2
 1.5
0.2
 2.0
0.1
 3.3
1.7
 3.1
0.9
 2.3
0.8
 3.7
0.4
 2.9
1.5
 0.7
0.4
 0.8
0.1
 2.4
1.0
 2.2
1.0
 1.5
0.1
 2.1
1.4
 0.3
-0.2
 1.8
1.5
 2.4
2.2
 1.4
1.1
31 HOXD3 homeobox D3 3232 0 4.9 5.2
 3.4
 17.8
 5.4
 5.5


17.8
 9.3
 11.3
 5.6
 5.2
 3.9
 7.6
 4.5
 7.5
 6.4
 4.6
 4.4
 7.8
 5.8

32 SKAP2 src kinase associated phosphoprotein 2 8935 0 4.5 4.1
 3.9
 0.6
 2.3
 2.0
 0.7
 0.7
 0.1
 -0.5
 -0.6
 0.8
 1.8
 0.4
 0.2
 -0.7
 2.5
 -0.1
 0.2
 1.0
 1.7
 1.5
 1.2

33 HOXB13 homeobox B13 10481 0 4.4 3.7
 4.0
 6.4
 6.8
 6.4
 2.9
 3.4
 3.4
 3.8
 3.3
 4.3
 1.9
 2.1
 1.3
 1.1
 1.6


7.3
 2.6
 4.5

34 HOXB-AS2 HOXB cluster antisense RNA 2 100874350 0 4.3 4.3






















35 CDX2 caudal type homeobox 2 1045 0 4.1 3.8
 3.5
 2.5
2.2
 1.7
0.8
 4.4
2.8
 2.1
0.8
 2.3
1.5
 3.3
1.8
 2.8
2.3
 2.8
1.4
 4.5
2.8
 2.0
0.5
 3.7
0.2


0.3
0.2
 1.8
1.5
 0.9
-0.2
 3.2
2.2
 2.9
2.5
 4.3
3.0
 3.3
 1.6
36 HOXC4 homeobox C4 3221 0 4.1 4.2
19.8
5.5
 15.9
7.4
 9.4
6.6
 2.6
2.4
 4.0
2.2
 2.3
1.5
 19.2
10.1
 14.3
9.8
 11.6
9.9
 6.1
4.2
 14.1
3.5
 6.2
4.9
 7.4
2.4
 3.8
2.9
 5.7
4.2
 5.4
4.0
 5.5
3.7
 2.9
2.0
 7.4
4.6
 6.0
4.7
 1.9
 2.3
37 HOXB2 homeobox B2 3212 0 4.0 3.6
 3.3
 3.6
3.1
 4.5
4.4
 7.0
3.6
 1.9
1.5
 2.8
1.3
 2.5
1.0
 6.0
3.7
 5.0
3.9
 8.1
5.6
 2.9
 2.0
 2.1
 0.2
 1.2
 3.3
2.6
 2.5
2.0
 2.8
2.2
 1.9
0.5
 4.7
1.6
 4.0
2.5
 0.7
38 PITX2 paired like homeodomain 2 5308 0 4.0 3.0
 4.0
 4.4
2.7
 5.1
3.3
 3.2
2.6
 1.2
0.4
 5.5
1.3
 1.6
0.8
 3.5
2.5
 5.6
3.0
 2.7
2.4
 1.2
0.8
 0.9
0.8
 3.3
2.3
 1.6
1.0
 1.6
0.8
 1.6
1.5
 1.4
1.0
 2.0
2.0
 1.8
0.9
 3.0
1.3
 1.9
1.0
 3.8
 2.0
39 LOC101060400 translation initiation factor IF-2 101060400 0 3.9 3.9






















40 HOXC13 homeobox C13 3229 0 3.5 2.5
 3.6
 4.6
 14.0
 3.6













12.4
 4.0
 6.3

41 MEIS1 Meis homeobox 1 4211 0 3.3 2.7
 3.1
 2.2
2.1
 2.8
1.8
 1.1
0.6
 -0.0
-0.9
 -0.8
-1.1
 0.4
0.3
 1.9
0.5
 2.0
1.6
 1.5
1.3
 1.8
0.7
 2.4
0.7
 3.2
0.3
 1.8
1.5
 1.3
0.7
 1.1
0.9
 0.9
-0.2
 0.6
-1.3
 3.1
2.1
 2.3
0.9
 1.9
1.5
 1.6
 2.8
42 GATA2 GATA binding protein 2 2624 0 3.3 2.0
 3.7
 2.9
2.2
 3.2
2.0
 3.8
2.2
 1.6
1.2
 3.3
2.4
 1.8
1.5
 2.6
2.5
 1.5
1.5
 2.5
1.9
 1.8
1.1
 1.7
0.8
 1.3
0.4
 2.3
2.2
 1.5
1.4
 1.2
0.9
 2.2
1.3
 1.1
-0.1
 0.7
0.1
 2.0
1.0
 1.0
0.8
 2.5
2.1
 4.8
3.1
43 RP9P RP9 pseudogene 441212 0 3.1 1.5
 4.1





















44 PRAC1 PRAC1 small nuclear protein 84366 0 3.1 2.9
 2.6





















45 EN1 engrailed homeobox 1 2019 0 3.1 3.1
 2.3
 6.1
 6.5
 3.9


3.5
 6.0
 2.6
 1.9
 3.3
 0.9
 0.5
 1.0
 -0.2
 0.8
 1.2
 1.1
 0.3
 0.2

46 TWIST2 twist family bHLH transcription factor 2 117581 0 3.0 3.1
3.3
3.2
 3.0
1.9
 1.4
-0.3
 0.0
-1.1
 1.9
-1.1
 1.5
1.2
 4.4
4.1
 4.9
3.7
 2.9
2.3
 1.6
0.7
 2.0
1.6
 2.0
0.3
 2.5
1.8
 0.1
-0.0
 2.9
-0.2
 0.6
0.4
 1.7
0.6
 2.0
1.4
 2.3
2.1
 3.4
2.5
 2.4
 2.5
47 LINC02086 long intergenic non-protein coding RNA 2086 105371809 0 3.0 3.1






















48 NUDT19 nudix hydrolase 19 390916 0 3.0 3.0
0.5
 0.3
 0.2
 -0.4
 -0.2
 -0.4
 0.1
 -0.1
 -0.3
 0.8
 -0.4
 -0.6
 -0.1
 -1.8
 -1.3
 -0.4
 -0.4
 -0.3
 -0.6
 -0.9
 0.3
-0.3
 -0.6
49 TBX18 T-box transcription factor 18 9096 0 2.9 1.6
 3.5
 3.9
 4.5
 1.1
 -1.0
 1.7
 0.4
 2.7
 3.3
 1.1
 1.0
 0.4
 2.2
 3.8
 1.6
 2.0
 0.5
 0.4
 0.2
 0.7
 0.9

50 ZNF503-AS2 ZNF503 antisense RNA 2 100131213 0 2.9 3.5
 1.5





















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