Orthologous genes in OrthoFinder**

Species Gene Description
 hsa-u.4   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 hsa-r.6   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 hsa-m.7   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 hsa-m2.4   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 mcc-u.3   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 mmu-u.4   Upf2   UPF2 regulator of nonsense transcripts homolog (yeast) 
 rno-u.3   Upf2   UPF2, regulator of nonsense mediated mRNA decay 
 cfa-u.3   UPF2   UPF2 regulator of nonsense mediated mRNA decay 
 gga-u.3   UPF2   UPF2 regulator of nonsense transcripts homolog (yeast) 
 dre-u.3   upf2   UPF2 regulator of nonsense mediated mRNA decay 
 dme-u.3   Upf2   Upf2 
 cel-u.3   smg-3   Suppressor with Morphological effect on Genitalia 
 sce-u.3   NMD2   Nmd2p 
 spo-u.3   cpc2   40S ribosomal protein cpc2/RACK1 

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Top 50 coexpressed genes to UPF2 (hsa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 hsa3040   Spliceosome  7 127 7.01
 hsa3013   Nucleocytoplasmic transport  3 95 2.54
 hsa4270   Vascular smooth muscle contraction  2 134 -
 hsa4022   cGMP-PKG signaling pathway  2 167 -
 hsa4024   cAMP signaling pathway  2 221 -

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hsa:UPF2 (UPF2 regulator of nonsense mediated mRNA decay) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID CoexPub LINK Target Reference

hsa-u.4
for
UPF2
hsa-r.6
for
UPF2
hsa-m.7
for
UPF2
hsa-m2.4
for
UPF2
mcc-u.3
for
UPF2
mmu-u.4
for
Upf2
rno-u.3
for
Upf2
cfa-u.3
for
UPF2
gga-u.3
for
UPF2
dre-u.3
for
upf2
dme-u.3
for
Upf2
cel-u.3
for
smg-3
sce-u.3
for
NMD2
spo-u.3
for
cpc2
1 TAF3 TATA-box binding protein associated factor 3 83860 0 8.9 10.0
 2.6
 5.6
 5.2
 5.3
 1.5
 5.0
 5.8
 2.6
 0.3
 1.1

2 SLTM SAFB like transcription modulator 79811 0 8.7 10.8
 3.0
 4.5
 7.6
 4.9
6.4
 7.1
 2.3
-0.2

3 CCAR1 cell division cycle and apoptosis regulator 1 55749 0 8.6 9.6
 2.1
 5.6
 4.4
 5.7
 2.6
 5.4
 7.5
 4.1



4 PHIP pleckstrin homology domain interacting protein 55023 0 8.6 10.5
 2.3
 4.7
 3.2
3.1
 6.1
2.5
 3.5
3.3
 8.1
3.3
 8.1
5.2
 1.7
1.5
 3.5


5 CWF19L2 CWF19 like cell cycle control factor 2 143884 0 8.6 12.7
 1.2
 2.4
 6.2
 8.7
 6.4
 5.7
 5.7
 2.2
0.2
 0.5
 2.4
0.5
6 PPIG peptidylprolyl isomerase G 9360 0 8.4 11.4
 1.9
 3.3
 7.0
5.6
 5.6
-0.6
 3.0
2.3
 6.1
-0.1
 5.7
0.4
 1.7
0.3
 1.1
0.3
 1.3
0.6
 0.5
0.3
 0.1
7 DDX46 DEAD-box helicase 46 9879 1 8.2 10.6
 1.7
 3.8
 10.5
 5.5
4.4
 7.6
 4.2
 1.7
2.4
 0.9
8 UPF3B UPF3B regulator of nonsense mediated mRNA decay 65109 67 8.0 9.2
 3.8
 4.9
 7.6
2.4
 8.1
1.6
 3.1
1.0
 5.7
2.8
 10.1
 2.9
0.9
 2.0
 1.5

9 THOC2 THO complex 2 57187 2 8.0 10.3
 1.8
 3.7
 3.4
 7.0
1.3
 4.0
1.7
 7.0
 6.6
 0.7
 3.0
 6.7
 2.8
 0.9
-0.1
10 KIN Kin17 DNA and RNA binding protein 22944 0 7.9 8.4
 3.0
 5.5
 4.3
 2.8
 1.5
 7.0
 3.0
 -0.3
 -0.0
 1.9
 1.0
 0.9
11 ARID4A AT-rich interaction domain 4A 5926 0 7.9 8.8
 2.6
 5.1
 8.2
5.6
 7.3
6.7
 6.8
4.0
 7.2
6.9
 7.3
6.0
 0.9
0.6
 3.1
 0.4
-0.6
12 ARID4B AT-rich interaction domain 4B 51742 0 7.8 9.7
 2.5
 4.1
 8.2
5.6
 7.3
6.7
 6.8
4.0
 7.2
6.9
 7.3
6.0
 0.9
0.6
 3.1
 0.4
-0.6
13 NCOR1 nuclear receptor corepressor 1 9611 0 7.7 11.6
 1.8
 2.0
 5.4
1.6
 5.6
0.9
 4.3
0.5
 4.0
0.6
 3.8
2.9
 2.2
1.9
 1.4
 1.6
 1.2
 -0.3
14 WAC WW domain containing adaptor with coiled-coil 51322 1 7.7 6.6
 4.0
 6.9
 3.5
 3.3
 4.1
 4.2
 3.3
 3.0
2.8
 3.5
 0.2
-1.1

15 RBM25 RNA binding motif protein 25 58517 0 7.6 8.7
 1.9
 4.7
 6.3
 5.5
 0.4
 7.3
 8.5
 3.1
0.4
 2.2
 3.8

16 PRPF4B pre-mRNA processing factor 4B 8899 0 7.6 10.1
 1.7
 3.2
 5.4
 7.7
 3.1
 5.6
 5.7
 2.5
1.3
 2.5
 4.5
0.5
17 SON SON DNA and RNA binding protein 6651 0 7.6 12.7
 1.1
 0.6
 4.3
 6.8
 4.3
 6.0
 2.7
 1.6
 0.9
 2.9

18 RSF1 remodeling and spacing factor 1 51773 0 7.6 9.1
 2.5
 4.2
 8.6
 6.4
 3.5
 7.1
 6.5
 1.0
-0.5
 1.6


19 NEMF nuclear export mediator factor 9147 0 7.4 10.5
 1.1
 2.5
 4.7
 7.9
 2.0
 3.9
 3.1
 4.4
 2.4
 5.1
 3.7
 -0.1
20 ZC3H13 zinc finger CCCH-type containing 13 23091 0 7.3 9.6
 1.8
 3.2
 7.4
 4.3
 1.2
 6.9
 6.8
 2.1
 1.6


21 ANKRD26 ankyrin repeat domain 26 22852 0 7.2 8.5
 2.4
 4.3
 4.4
1.2
 5.6
 0.9
 0.4
 2.4
 2.2


0.2
22 BOD1L1 biorientation of chromosomes in cell division 1 like 1 259282 0 7.1 8.3
 1.5
 4.2
 6.8
 6.7
 4.6
 6.6
 7.1




23 ANKRD12 ankyrin repeat domain 12 23253 0 7.1 9.2
 2.1
 3.3
 5.9
 5.6
 3.5
 4.8
 3.4
 0.2
 1.3


24 EIF5B eukaryotic translation initiation factor 5B 9669 0 7.1 8.6
 2.1
 3.8
 6.5
 6.7
 3.9
 6.1
 7.0
 0.3
 2.5
 1.3
 2.2
 -0.9
25 ATRX ATRX chromatin remodeler 546 0 7.0 9.8
 1.4
 2.4
 6.3
 5.2
 4.7
 6.5
 8.3
 2.1
 3.1
 5.3

26 NSRP1 nuclear speckle splicing regulatory protein 1 84081 0 6.9 8.2
 2.3
 3.9
 4.6
 8.7
 2.9
 5.4
 8.7
 1.5
 1.1
 3.0

27 BPTF bromodomain PHD finger transcription factor 2186 0 6.9 8.5
 2.7
 3.6
 5.8
 6.3
 3.3
 6.2
 7.7
 1.8
 2.0


28 ROCK1 Rho associated coiled-coil containing protein kinase 1 6093 1 6.8 8.0
 2.0
 3.9
 3.4
1.6
 4.9
2.9
 1.5
1.4
 5.3
3.3
 2.8
2.6
 2.8
0.5
 5.1
 4.1

29 CDK11B cyclin dependent kinase 11B 984 0 6.8 6.8

5.2
 2.7
 1.1
 3.1
 4.5
 3.6
 1.2
 4.2
1.2
-0.0
30 EIF3A eukaryotic translation initiation factor 3 subunit A 8661 3 6.8 6.5
 2.5
 5.3
 3.6
 3.8
 3.0
 4.4
 4.4
 4.2
 3.3
 4.2
 1.4
 -1.0
31 SMC3 structural maintenance of chromosomes 3 9126 0 6.7 6.8
 1.0
 4.9
 3.1
 6.2
 2.8
 3.7
 6.1
 5.4
 1.2
 4.2
 0.5
32 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 51575 0 6.7 7.6
 1.3
 4.1
 5.1
 6.7
 4.0
 3.7
 3.8
 1.2
 1.5
 2.4
 1.9
 0.2
33 PRPF18 pre-mRNA processing factor 18 8559 0 6.6 5.1
 1.9
 6.6
 1.4
 2.4
 5.1
 5.7
 2.7
 -0.9
 0.3
 0.8
 -0.8
 -0.8
34 BAZ1B bromodomain adjacent to zinc finger domain 1B 9031 0 6.6 8.2
 1.7
 3.4
 6.7
 2.0
 0.1
 3.4
 5.3
 0.3



35 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 55814 0 6.5 9.8
 0.6
 1.6
 6.9
 5.3
 4.8
 7.4
 3.7
 -0.7
-0.7
 1.7
 3.9
 3.6
 -0.1
36 MPHOSPH8 M-phase phosphoprotein 8 54737 0 6.5 9.1
 1.6
 2.3
 7.8
 8.2
 3.5
 7.3
 7.2
 0.6
1.4

37 PRRC2C proline rich coiled-coil 2C 23215 0 6.4 9.3
 1.5
 1.9
 5.4
 5.0
 0.5
 6.2
2.0



38 TPR translocated promoter region, nuclear basket protein 7175 0 6.4 7.4
 1.1
 3.8
 5.1
 5.5
 3.8
 6.2
 5.1
 4.1
4.0
 2.4
6.0
4.1
39 GCC2 GRIP and coiled-coil domain containing 2 9648 0 6.1 7.3
 1.4
 3.4
 4.3
 7.9
 7.4
 4.3
 3.9
 3.1
 5.1
 3.3

40 PPP1R12A protein phosphatase 1 regulatory subunit 12A 4659 0 6.0 7.1
 2.6
 3.4
 5.2
 3.6
 4.2
 3.8
 4.6
 -0.1
 0.3
 1.4

41 PRPF40A pre-mRNA processing factor 40 homolog A 55660 0 6.0 7.5
 1.4
 3.0
 1.7
0.1
 3.2
0.1
 3.6
0.1
 8.0
0.2
 4.3
 1.8
 0.2
 2.8
 1.3
42 RBM27 RNA binding motif protein 27 54439 0 5.9 6.7
 0.8
 3.7
 4.3
2.6
 5.7
4.2
 5.0
4.4
 7.1
3.6
 5.1
4.0
 1.0
1.0
 3.3
 0.9

43 OGA O-GlcNAcase 10724 0 5.9 6.2
 1.7
 4.2
 3.5
 3.6
 4.4
 3.3
 2.8
 3.2
0.1
 1.1
 0.3
-0.7
44 CDC5L cell division cycle 5 like 988 0 5.9 5.2
 0.7
 5.2
 4.8
 4.0
 2.2
 4.5
 4.8
 2.7
 3.1
 5.3
 1.8
 0.4
45 CEP350 centrosomal protein 350 9857 0 5.9 6.0
 1.3
 4.3
 4.0
 3.9
 5.1
 4.9
 3.6
 0.3



46 USP8 ubiquitin specific peptidase 8 9101 0 5.8 7.1
 1.9
 3.1
 4.5
 2.1
 4.9
 3.0
 3.5
 3.5
 -0.2
 0.2
 -0.2
 0.6
47 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 140890 0 5.8 7.1
 0.8
 3.1
 5.0
 5.5
 1.8
 5.5
 5.4
 0.6
 0.9
 0.9

48 SBNO1 strawberry notch homolog 1 55206 0 5.8 6.1
 2.0
 4.1
 4.1
0.4
 5.5
 3.8
-1.0
 4.5
0.5
 7.5
1.9
 4.2
-0.6
 2.9
0.9
 0.6

49 RBM17 RNA binding motif protein 17 84991 0 5.8 5.6
 2.4
 4.6
 1.8
 1.8
 0.6
 5.8
 3.5
 2.5
 -0.3
 1.2

50 GOLGA4 golgin A4 2803 0 5.8 6.2
 0.8
 4.0
 4.8
 5.0
 3.2
 6.3
 6.2
 1.0
 0.9
 1.2

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