Orthologous genes in OrthoFinder**

Species Gene Description
 gga-u.3   SHFM1   split hand/foot malformation (ectrodactyly) type 1 
 gga-r.3   SHFM1   split hand/foot malformation (ectrodactyly) type 1 
 gga-m.5   SHFM1   split hand/foot malformation (ectrodactyly) type 1 
 mmu-u.4   Sem1   SEM1, 26S proteasome complex subunit 
 rno-u.3   Sem1   SEM1 26S proteasome subunit 
 mcc-u.3   SEM1   SEM1 26S proteasome complex subunit 
 cfa-u.3   SEM1   SEM1 26S proteasome subunit 
 dre-u.3   sem1   SEM1 26S proteasome subunit 
 dme-u.3   Sem1   Suppressor of exocyst mutations 1 
 cel-u.3   dss-1   putative 26S proteasome complex subunit dss-1 
 sce-u.3   SEM1   proteasome regulatory particle lid subunit SEM1 
 spo-u.3   utp23   putative rRNA processing protein Utp23 

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Top 50 coexpressed genes to SHFM1 (gga-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 gga190   Oxidative phosphorylation  11 102 6.13
 gga3010   Ribosome  8 115 7.19
 gga4260   Cardiac muscle contraction  4 63 4.36
 gga3040   Spliceosome  4 106 3.48
 gga3018   RNA degradation  3 69 2.89

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gga:SHFM1 (split hand/foot malformation (ectrodactyly) type 1) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

gga-u.3
for
SHFM1
gga-r.3
for
SHFM1
gga-m.5
for
SHFM1
mmu-u.4
for
Sem1
rno-u.3
for
Sem1
mcc-u.3
for
SEM1
cfa-u.3
for
SEM1
dre-u.3
for
sem1
dme-u.3
for
Sem1
cel-u.3
for
dss-1
sce-u.3
for
SEM1
spo-u.3
for
utp23
1 USMG5 up-regulated during skeletal muscle growth 5 homolog (mouse) 423873 11.0 5.8
9.8
 7.4
6.0
 6.7
 5.3
 5.3
 2.7
-0.9


2 POLR2K RNA polymerase II subunit K 112529926 9.9 5.3
11.9
 9.7
 5.1
 1.6
 9.7
 5.4
 3.9
 2.7
3 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 768660 9.5 5.1
9.5
 7.7
 5.4
 5.6
 4.7
 1.9
1.7
 4.4
 1.6
4 UQCRB ubiquinol-cytochrome c reductase binding protein 420236 9.3 5.8
 2.8
 10.2
 6.4
 5.9
 6.2
 5.3
 2.9
0.3
 5.3
 1.4
5 MRPL30 mitochondrial ribosomal protein L30 418699 9.2 4.9
5.3
 4.9
 2.1
 2.7
 0.3
 3.2
 3.4
0.4
6 COX7B cytochrome c oxidase subunit 7B 771947 9.2 4.9
8.8
 5.7
-0.1
 6.4
 6.7
 4.0



7 SNRPF small nuclear ribonucleoprotein polypeptide F 417916 8.8 4.7
11.1
6.4
 6.5
 9.3
7.3
 6.6
3.8
 8.3
6.4
 6.6
5.9
 5.1
4.5
 4.0
0.4
8 ATP5L ATP synthase, H+ transporting, mitochondrial Fo complex subunit G 101749042 8.5 4.5
11.5
 7.9
-0.2
 6.9
 4.0
 3.7
 1.6
1.3
 6.2
0.3

9 NEDD8 NEDD8 ubiquitin like modifier 100858776 8.4 4.5
-0.6
 -1.1
 -0.6
 -1.1
 0.9
0.5



10 C8orf59 chromosome 8 open reading frame 59 101751649 8.4 4.5
6.8
 8.3
 7.7
 5.8
 4.7



11 HSBP1 heat shock factor binding protein 1 415813 8.2 4.8
 2.8
 5.0
 2.7
 3.3
 3.5




12 C14orf2 chromosome 14 open reading frame 2 772187 8.0 6.0
 1.5
 8.4
 2.6
 5.3
 4.1
-0.3




13 TMA7 translation machinery associated 7 homolog 770887 8.0 6.6
 0.8








14 LOC107051797 atherin-like 107051797 7.9 4.3









15 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 770135 7.9 4.2
7.8
 6.2
0.4
 3.1
 2.9
 5.4
 5.1
-0.3


16 MINOS1 mitochondrial inner membrane organizing system 1 419474 7.8 5.7
 1.5
 9.4
 9.1
 7.3
 6.4
 3.3
 3.0
0.3
 4.8
 1.1
17 LOC107052389 small EDRK-rich factor 1-like 107052389 7.7 4.1
6.5
4.1
 6.1
3.5
 2.9
 2.3
1.6
 5.6
1.2
 2.3

-0.5
18 NDUFB1 NADH:ubiquinone oxidoreductase subunit B1 423415 7.6 5.6
 1.4
 12.6
9.1
 2.2
 4.0



19 LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated 420751 7.5 4.2
 2.7
 10.0
 9.0
 5.9
 11.4
 5.9
 4.5
 4.8
 1.1
20 LOC121108888 cytochrome c oxidase subunit 6B1 121108888 7.4 4.0
9.1
0.9
 4.7
0.1
 6.0
 3.5
2.3
 4.2
0.3
 1.3
 5.2
 0.4
21 UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X 770937 7.1 5.7
 1.0
 6.5
 7.9
 7.3
 5.9
 4.5
 3.3
0.2
22 SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 771344 7.1 5.9
 0.7
 11.0
10.0
 7.1
 6.7
 6.6
 5.6
 0.8
23 PSMA3 proteasome subunit alpha 3 423542 7.1 5.6
 1.0
 4.9
 -0.1
 6.8
 5.7
 13.0
 8.6
 6.9
 3.6
24 ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 416495 7.0 5.3
 1.2
 10.0
 8.6
 4.4
2.6
4.4
-1.4
 1.0
 3.8

25 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 418477 6.9 4.4
 2.0
 10.2

4.2
 3.5
 1.6
1.0


26 SEC61G Sec61 translocon gamma subunit 776639 6.9 5.5
 0.9
 10.0
 8.0
 8.4
 5.1
 2.8
 4.2
4.1
 2.4
 2.6
27 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 417771 6.9 2.3
 4.0
 2.4
2.3
 1.5
0.2
 0.6
0.0
 7.4
0.5
 2.5
2.0
 2.8
 1.6
 2.8
 0.1
28 UBE2V2 ubiquitin conjugating enzyme E2 V2 421109 6.8 2.5
 3.7
 0.5
0.4
 4.4
-0.4
 3.8
3.4
 0.8
 4.4
3.7
 2.7
 5.1
 2.1
29 MRPL40 mitochondrial ribosomal protein L40 100858795 6.8 3.7
2.2
 0.8
 5.4
 2.1
 3.4
 2.5
 0.8

30 UBE2V1 ubiquitin conjugating enzyme E2 V1 100538349 6.8 3.7
0.5
0.4
 4.4
-0.4
 3.8
3.4
 0.8
 4.4
3.7
 2.7
 5.1
 2.1
31 HYPK huntingtin interacting protein K 770307 6.8 3.6
6.3
 9.5
 8.8
 3.6
 7.5
 7.2
 3.9

32 OST4 oligosaccharyltransferase complex subunit 4, non-catalytic 100526758 6.6 3.6
6.1
 7.0
2.9
 8.2
 4.4
 3.3
0.8
0.5
33 GLRX3 glutaredoxin 3 423968 6.6 3.8
 2.3
 4.0
 2.7
 2.2
 2.9
 3.2
 2.6
 2.4
 1.5
-0.7
 2.0
34 MRPS18C mitochondrial ribosomal protein S18C 770813 6.5 3.5
9.9
 9.9
 6.2
 3.5
 4.3
 1.7
 2.4
 1.7
 -2.1
35 MRPL47 mitochondrial ribosomal protein L47 424977 6.4 3.4
1.6
 2.4
 3.9
 4.2
 3.1
 2.3
 1.2
 -2.4
36 ROMO1 reactive oxygen species modulator 1 768833 6.4 4.8
 1.1
 9.9
 8.1
 5.0
 4.5
 1.8
 2.3
 2.9
 0.3
 -1.5
37 RSL24D1 ribosomal L24 domain containing 1 768911 6.3 3.4
1.4
 0.9
 2.3
 2.6
 1.8
 0.4
 -0.0
 -0.7
38 MYCBP MYC binding protein 770496 6.3 4.8
 1.1
 3.0
 6.2
 2.9
 2.8
 2.7
 5.1


39 TCEB1 transcription elongation factor B subunit 1 420187 6.3 2.9
 2.9
 5.2
 4.9
 6.3
 4.3
 3.3
2.5
 3.5
 2.2
-0.3
 0.9
40 NDUFB3 NADH:ubiquinone oxidoreductase subunit B3 424078 6.3 5.0
 0.8
 10.2
 5.2

4.6
 2.1
 4.3

41 NDUFA4 NDUFA4, mitochondrial complex associated 772135 6.2 4.4
 1.4
 8.1
-0.1
 8.4
0.2
 5.0
-0.3
 9.5
0.5
 1.6
0.7
 1.9

0.7
42 MRPL27 mitochondrial ribosomal protein L27 422105 6.2 4.5
 1.3
 4.1
 7.6
 4.9
 4.4
 3.4
 1.8
 3.8
 -1.2
 3.4
43 CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 423741 6.2 3.7
 2.1








44 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 416040 6.2 4.9
 0.8
 6.4
 6.3
 8.6
 3.6
 8.3
 5.9
 5.0
 2.6
45 MRPS17 mitochondrial ribosomal protein S17 417538 6.1 2.9
 2.8
 3.4
 5.8
 6.0
3.6
 1.5
 1.0
-0.1
46 DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 418838 6.0 3.4
 2.2
 5.9
5.1
 7.9
5.9
 6.5
1.5
 5.9
2.7
 3.2
0.8
 2.6
 2.2
 0.6
 -1.9
47 RPL36A ribosomal protein L36a 100859914 6.0 3.2
9.4
8.2
 11.4
6.4
 7.2
 4.7
3.8
 3.2
 5.3
 1.9
 0.0
-0.2
48 RPL38 ribosomal protein L38 771528 6.0 5.2
 0.4
 9.1
5.6
 5.0
 3.3
 2.9
 1.9
 3.3
49 EXOSC8 exosome component 8 100858560 6.0 3.2
1.8
1.2
 3.7
1.0
 3.9
2.8
 2.0
-0.5
 1.8
1.1
 0.4
 1.8
-0.5
 -1.9
 0.7
50 MRPL19 mitochondrial ribosomal protein L19 422066 6.0 3.2
 2.3
 0.5
 1.4
 3.2
 2.2
 1.2
 2.4
 0.7
 -0.9
 -1.5
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