Orthologous genes in OrthoFinder**

Species Gene Description
 dre-u.3   rd3   retinal degeneration 3, GUCY2D regulator 
 dre-r.3   rd3   retinal degeneration 3, GUCY2D regulator 
 mmu-u.4   Rd3   retinal degeneration 3 
 rno-u.3   Rd3   RD3 regulator of GUCY2D 
 gga-u.3   RD3   retinal degeneration 3 

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Top 50 coexpressed genes to rd3 (dre-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 dre4744   Phototransduction  3 44 3.76
 dre380   Tryptophan metabolism  1 53 -
 dre562   Inositol phosphate metabolism  1 96 -
 dre4371   Apelin signaling pathway  2 193 -
 dre4080   Neuroactive ligand-receptor interaction  2 586 -

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dre:rd3 (retinal degeneration 3, GUCY2D regulator) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

dre-u.3
for
rd3
dre-r.3
for
rd3
mmu-u.4
for
Rd3
rno-u.3
for
Rd3
gga-u.3
for
RD3
1 ankrd33ba ankyrin repeat domain 33ba 568270 5.3 2.8
 1.5
0.9
2 LOC100535624 uncharacterized LOC100535624 100535624 4.8 2.5


3 prph2la peripherin 2-like a 100331800 4.7 2.5

1.1
4 aanat2 arylalkylamine N-acetyltransferase 2 30685 4.5 2.4

0.9
5 grm6b glutamate receptor, metabotropic 6b 565450 4.5 2.4
 0.9
-0.1
 2.6
0.5
 1.5
1.5
6 si:dkey-220f10.4 si:dkey-220f10.4 564717 4.5 2.4


7 cnrip1b cannabinoid receptor interacting protein 1b 556881 4.5 2.4
 1.2
 0.6
 0.1
8 rcvrn2 recoverin 2 335650 4.4 2.3
 1.2
 2.0
 0.5
9 syt5b synaptotagmin Vb 553567 4.4 2.3
 1.7
1.2
 1.9
1.8
 1.5
1.4
10 pcare2 photoreceptor cilium actin regulator 2 100538059 4.3 2.3


11 mmrn2a multimerin 2a 100148368 4.2 2.2
 0.7
 -0.6
 -0.9
12 rgs9b regulator of G protein signaling 9b 793087 4.2 2.2
 2.5
 1.8
 1.9
13 arl3l1 ADP ribosylation factor like GTPase 3, like 1 393666 4.2 2.2
 1.0
-1.1
 0.9
-0.2
 1.1
-0.3
14 rdh8a retinol dehydrogenase 8a 280648 4.1 2.2
0.1
 0.6
0.1
15 lrit2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 553557 4.1 2.2

-1.5
16 rtbdn retbindin 553764 4.1 2.2

-0.7
17 otx5 orthodenticle homolog 5 353179 4.1 2.2
 3.3
2.6
 5.9
3.1
 0.7
0.3
18 emx1 empty spiracles homeobox 1 378964 4.1 2.1
 0.8
-0.8
 0.6
-0.3
 0.3
0.0
19 tulp1a TUB like protein 1a 100330754 4.1 2.1
 2.4
1.2
 2.6
0.6
 1.0
-0.1
20 abca4a ATP-binding cassette, sub-family A (ABC1), member 4a 798993 4.0 2.1


21 rcvrna recoverin a 570333 4.0 2.1
 1.2
 2.0
 0.5
22 lingo4b leucine rich repeat and Ig domain containing 4b 559074 4.0 2.1
 -0.2
 -0.3
 -0.6
23 parp6b poly (ADP-ribose) polymerase family, member 6b 100002364 4.0 2.1
 -0.4
 0.0
 0.1
24 plch2b phospholipase C, eta 2b 560919 3.9 2.1
 1.0
0.5
 1.7
0.6
 2.0
1.0
25 LOC100534741 uncharacterized LOC100534741 100534741 3.9 2.1
 2.6
-0.4
 2.1
-0.4
 0.5
0.1
26 si:dkey-1d7.3 si:dkey-1d7.3 793262 3.9 2.1
 1.0
-0.0
 1.0
-0.1
 2.0
1.2
27 gngt2a guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a 335655 3.9 2.1
 3.4
0.7
 2.2
0.9
 1.5
0.5
28 zgc:153615 zgc:153615 777747 3.8 2.0
0.2
 0.4
29 chrna6 cholinergic receptor, nicotinic, alpha 6 555747 3.8 2.0
 1.8
0.6
 1.7
0.7
 0.8
0.1
30 rlbp1a retinaldehyde binding protein 1a 393678 3.8 2.0
 1.5
 1.2
 1.7
31 pcdh1g31 protocadherin 1 gamma 31 554015 3.8 2.0
0.9
32 pcdh1g30 protocadherin 1 gamma 30 554014 3.8 2.0
0.9
33 zgc:109965 zgc:109965 619266 3.8 2.0
 -0.8
 -0.3
 -0.6
34 tmem244 transmembrane protein 244 556137 3.8 2.0


35 pcdh1gc5 protocadherin 1 gamma c 5 503571 3.8 2.0
0.9
36 cacna2d4a calcium channel, voltage-dependent, alpha 2/delta subunit 4a 568225 3.7 2.0
 1.1
-0.5
 0.7
 2.1
-0.3
37 zgc:162999 zgc:162999 100038772 3.7 2.0
 1.3
0.3
 0.9
0.5
 1.8
0.9
38 prph2lb peripherin 2-like b 567873 3.7 2.0


39 fam161a FAM161 centrosomal protein A 558320 3.7 2.0
 4.2
-0.0
40 gfra1a gdnf family receptor alpha 1a 79376 3.7 2.0
 -0.1
 -1.0
 0.2
41 phf24 PHD finger protein 24 558943 3.7 1.9
 -0.4
 -0.5
 1.4
42 neurod1 neuronal differentiation 1 30169 3.6 1.9
 1.1
1.0
 3.4
1.5
 1.5
0.9
43 isl1a ISL LIM homeobox 1a 30147 3.6 1.9
 0.3
0.2
 1.7
1.0
 -0.4
-0.9
44 si:dkey-162b23.4 si:dkey-162b23.4 571064 3.6 1.9
 1.5
-0.9
 0.7
0.3
 -1.0
45 stxbp1b syntaxin binding protein 1b 557717 3.6 1.9
 0.1
0.0
 0.6
0.1
 0.7
0.7
46 zgc:103625 zgc:103625 447931 3.6 1.9
 1.0
 0.3
47 si:dkey-283b15.2 si:dkey-283b15.2 569313 3.6 1.9
 0.1
 0.2
 -0.3
48 gnb5a guanine nucleotide binding protein (G protein), beta 5a 562813 3.6 1.9
 1.6
0.6
 3.1
0.9
 1.2
0.1
49 abcg1 ATP-binding cassette, sub-family G (WHITE), member 1 556979 3.6 1.9
 0.7
-0.1
 0.5
0.3
 1.8
0.4
50 ndrg1b N-myc downstream regulated 1b 393665
-0.4
-0.4
 0.3
0.1
 0.7
0.7
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