Orthologous genes in OrthoFinder**

Species Gene Description
 dre-u.3   lig3   ligase III, DNA, ATP-dependent 
 dre-r.3   lig3   ligase III, DNA, ATP-dependent 
 hsa-u.4   LIG3   DNA ligase 3 
 mmu-u.4   Lig3   ligase III, DNA, ATP-dependent 
 rno-u.3   Lig3   DNA ligase 3 
 gga-u.3   LIG3   DNA ligase 3 
 mcc-u.3   LIG3   DNA ligase 3 
 cfa-u.3   LIG3   DNA ligase 3 
 dme-u.3   DNAlig3   DNA ligase 3 

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Top 50 coexpressed genes to lig3 (dre-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 dre3040   Spliceosome  7 139 7.33
 dre3008   Ribosome biogenesis in eukaryotes  3 75 3.08
 dre4110   Cell cycle  3 153 2.20
 dre3020   RNA polymerase  2 33 2.53
 dre3015   mRNA surveillance pathway  2 99 -

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dre:lig3 (ligase III, DNA, ATP-dependent) External Links;


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Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

dre-u.3
for
lig3
dre-r.3
for
lig3
hsa-u.4
for
LIG3
mmu-u.4
for
Lig3
rno-u.3
for
Lig3
gga-u.3
for
LIG3
mcc-u.3
for
LIG3
cfa-u.3
for
LIG3
dme-u.3
for
DNAlig3
1 pbrm1l polybromo 1, like 445141 8.7 4.5
 1.8
 -0.3
 2.8
 2.7
 1.6
 1.3
 1.2
2 hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 406555 8.2 4.3
 3.2
2.5
 2.5
2.2
 2.8
1.1
 2.3
1.8
 1.4
1.0
 1.6
1.0
 -0.9
3 pelp1 proline, glutamate and leucine rich protein 1 100003680 6.8 3.6
 3.6
 4.2
 -0.5
1.4
 1.0
 0.9
4 pds5a PDS5 cohesin associated factor A 393967 6.7 3.5
 2.0
0.5
 1.9
-0.3
 4.3
2.0
 2.0
0.5
 2.9
-0.1
 1.2
-1.1
 -0.2
5 plrg1 pleiotropic regulator 1 100004402 6.6 3.5
 -1.3
 0.9
 1.1
 3.5
 0.7
 -1.1
 0.7
6 smc1al structural maintenance of chromosomes 1A, like 403060 6.3 3.3
 4.2
-0.1
 1.2
0.1
 -0.5
-0.5
 0.2
-0.7
 2.2
 1.9
 0.1
7 noc3l NOC3-like DNA replication regulator 321289 6.2 3.3
 1.4
 2.5
 1.2
 2.5
 2.1
 -1.6
 2.0
8 rbm17 RNA binding motif protein 17 393889 6.2 3.2
 -0.3
 -0.4
 -0.1
 2.8
 0.1
 1.1
 1.3
9 ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component 100036549 6.1 3.2
 -0.4
 4.6
 2.2
 1.0
 1.0
 -0.9
 2.2
-1.0
10 top2b DNA topoisomerase II beta 569877 6.1 3.2
 1.5
1.0
 1.0
0.4
 0.7
-0.3
 0.5
0.2
 0.6
0.1
 0.8
-1.1
 1.4
11 zgc:152816 zgc:152816 777712 6.0 3.1





-0.1
-1.5
12 mbtps1 membrane-bound transcription factor peptidase, site 1 326710 6.0 3.1
 2.6
 3.3
 1.4
 0.4
 1.3
 2.5
 0.3
13 sf3b3 splicing factor 3b, subunit 3 406824 5.9 3.1
 4.5
 3.2
 1.9
 4.5
 3.1
 3.4
 1.5
14 cpsf1 cleavage and polyadenylation specific factor 1 432372 5.9 3.1
 1.6
 2.7
 1.7
 2.3
0.8
 0.9
 2.3
 2.3
15 crnkl1 crooked neck pre-mRNA splicing factor 1 393920 5.8 3.0
 1.2
 2.3
 1.9
 2.0
 0.6
 -0.7
 3.0
16 nom1 nucleolar protein with MIF4G domain 1 557585 5.8 3.0
 3.3
 3.6
 2.2
 2.2
 1.7
 1.5
 3.0
17 cul1a cullin 1a 323883 5.7 3.0
 1.3
 0.3
 0.3
 0.4
 0.8
 1.7
 1.5
18 kpna5 karyopherin alpha 5 (importin alpha 6) 553205 5.7 3.0
 3.2
0.6
 3.4
2.9
 4.9
1.1
 2.4
1.8
 2.8
1.0
 0.5
0.5
 1.6
19 dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 568043 5.6 3.0
 1.6
 -0.6
 -0.4
2.4
 -0.2
 1.9
1.1
20 pak2b p21 protein (Cdc42/Rac)-activated kinase 2b 325034 5.6 2.9
 1.8
1.3
 1.2
0.3
 4.2
-0.5
 0.9
0.3
 1.9
0.3
 1.4
-0.2
 0.9
0.5
21 LOC100536595 uncharacterized LOC100536595 100536595 5.5 2.9






22 atrx ATRX chromatin remodeler 323299 5.5 2.9
 -0.4
 -0.2
 -0.6
 0.0
 -1.3
 -1.3
 0.9
23 polr1b RNA polymerase I subunit B 325603 5.5 2.9
 2.1
 4.2
 1.7
 5.3
 2.9
 -1.5
 2.6
24 hdac1 histone deacetylase 1 192302 5.4 2.9
 0.9
0.5
 0.3
-0.0
 1.7
0.0
 3.8
2.6
 0.7
0.7
 2.1
1.5
 0.1
25 si:dkey-250d21.1 si:dkey-250d21.1 402835 5.4 2.8






26 polr2c RNA polymerase II subunit C 334669 5.4 2.8
 0.9
 -0.9
 0.3
 2.5
 0.6
 1.6
 0.6
27 utp20 UTP20 small subunit processome component 557849 5.3 2.8
 4.1
 3.5
 2.2
 3.8
 2.2
 -0.3
 1.0
28 zgc:161969 zgc:161969 569044 5.3 2.8
 1.3

0.8
 1.1
 1.1
 2.4
1.2
29 sf3a3 splicing factor 3a, subunit 3 446168 5.3 2.8
 1.9
 1.8
 0.2
 2.0
 1.1
 -0.1
 1.9
30 si:ch211-166e11.5 si:ch211-166e11.5 100334858 5.3 2.8






31 tsr1 TSR1 ribosome maturation factor 325037 5.2 2.7
 4.2
 3.6
 1.6
 3.9
 2.6
2.1
32 rnmt RNA (guanine-7-) methyltransferase 562801 5.2 2.7
 0.4
 1.1
 1.2
 -0.2
 -0.7
 -0.5
 0.9
33 prpf4bb pre-mRNA processing factor 4Bb 406758 5.2 2.7
 0.5
 1.5
 1.3
 3.5
 1.5
 0.5
 2.4
34 pdcd11 programmed cell death 11 794079 5.1 2.7
 4.5
 4.4
 3.6
 4.2
 1.5
 0.8
 2.3
35 cnot3a CCR4-NOT transcription complex, subunit 3a 449540 5.1 2.7
 3.3
 0.6
 0.1
1.8
 2.6
 2.4
36 hnrnpl heterogeneous nuclear ribonucleoprotein L 394074 5.1 2.7
 4.5
0.1
 1.5
1.0
 1.9
-0.6
 2.6
0.9
 1.6
1.2
 2.5
1.0
 -1.8
37 rnf40 ring finger protein 40 798088 5.1 2.7
 1.8
1.0
 3.1
1.4
 1.1
1.0
 1.6
 1.8
1.0
 2.8
0.9
 0.7
38 hira histone cell cycle regulator a 568076 5.1 2.7
 1.7
 1.9
 1.3
 2.7
 1.8
 3.4
 -0.5
39 pias2 protein inhibitor of activated STAT, 2 564149 5.1 2.7
 1.1
1.1
 1.7
0.8
 1.8
0.6
 2.8
2.6
 0.9
0.8
 2.3
0.9
 -1.1
40 emg1 EMG1 N1-specific pseudouridine methyltransferase 678588 5.1 2.7
 3.2
 0.5
 -0.4
 2.4
 0.5
 1.0
 -0.1
41 dnmt3bb.2 DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2 30659 5.1 2.7






42 zbtb8b zinc finger and BTB domain containing 8B 550243 5.1 2.7
 -0.6
-0.7
 0.5
-0.1
 0.3
-0.1
 1.6
1.3
 1.2
 -1.0
 -1.1
-1.3
43 znf280d zinc finger protein 280D 556610 5.0 2.6
 2.2
 1.3
0.9
 1.5
1.2
 1.9
 2.3
1.6
 0.1
-0.7
44 chd4b chromodomain helicase DNA binding protein 4b 560622 5.0 2.6
 3.0
1.8
 3.4
-0.2
 2.9
0.9
 1.6
-1.2
 1.3
0.6
 1.7
1.2
 0.2
0.2
45 bms1 BMS1 ribosome biogenesis factor 553241 5.0 2.6
 2.5
 4.8
 1.7
 2.3
 1.7
1.5
 0.3
 2.3
46 puf60b poly-U binding splicing factor b 415211 5.0 2.6
 1.5
 0.7
 1.2
 2.8
 1.2
 2.0
 0.4
47 wdr75 WD repeat domain 75 368478 5.0 2.6
 0.4
 2.0
 0.2
 3.9
 -0.9
 -1.3
 1.1
48 smu1a SMU1 DNA replication regulator and spliceosomal factor a 393168 5.0 2.6
 2.3
 1.3
 2.5
 3.4
 2.3
 -0.6
 1.2
49 prpf8 pre-mRNA processing factor 8 393951 5.0 2.6
 5.2
 3.1
 2.5
 3.8
 2.1
 4.4
 1.0
50 ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 100000660 4.9 2.6
 -0.7
1.4
 1.2
 0.2
 0.0
 2.0
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