Orthologous genes in OrthoFinder**

Species Gene Description
 dre-u.3   limch1a   LIM and calponin homology domains 1a 
 dre-r.3   limch1a   LIM and calponin homology domains 1a 
 dre-u.3   limch1b   LIM and calponin homology domains 1b 
 hsa-u.4   LIMCH1   LIM and calponin homology domains 1 
 mmu-u.4   Limch1   LIM and calponin homology domains 1 
 rno-u.3   Limch1   LIM and calponin homology domains 1 
 gga-u.3   LIMCH1   LIM and calponin homology domains 1 
 mcc-u.3   LIMCH1   LIM and calponin homology domains 1 
 cfa-u.3   LIMCH1   LIM and calponin homology domains 1 

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Top 50 coexpressed genes to limch1a (dre-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 dre4371   Apelin signaling pathway  4 178 3.02
 dre4260   Cardiac muscle contraction  2 145 -
 dre4144   Endocytosis  2 341 -
 dre4020   Calcium signaling pathway  3 377 -
 dre4010   MAPK signaling pathway  2 409 -

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dre:limch1a (LIM and calponin homology domains 1a) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

dre-u.3
for
limch1a
dre-r.3
for
limch1a
dre-u.3
for
limch1b
hsa-u.4
for
LIMCH1
mmu-u.4
for
Limch1
rno-u.3
for
Limch1
gga-u.3
for
LIMCH1
mcc-u.3
for
LIMCH1
cfa-u.3
for
LIMCH1
1 kif21a kinesin family member 21A 566481 6.1 3.2
 1.9
1.5
 1.3
-0.9
 2.1
-1.0
 2.4
2.0
 0.7
0.1
 1.1
-0.4
 -0.4
-0.7
2 zfyve9a zinc finger, FYVE domain containing 9a 100005449 5.9 3.1
 2.9
1.1
 0.1
 0.8
0.5
 0.7
 1.4
1.1
 1.2
1.0
 1.5
0.0
3 cdk5rap2 CDK5 regulatory subunit associated protein 2 334460 5.9 3.1
 2.1
 1.1
 0.7
 0.9
 -0.2
 1.2
 0.6
4 fhod3a formin homology 2 domain containing 3a 564742 5.7 3.0
 1.3
1.0
 1.2
-0.2
 0.8
0.4
 3.0
0.4
 1.0
0.1
 0.4
-0.1
 1.2
-0.3
5 usp13 ubiquitin specific peptidase 13 558011 5.5 2.9
 2.6
-2.0
 0.7
0.3
 2.7
-0.6
 2.7
 2.7
0.9
 1.8
0.1
 1.3
-0.1
6 ryr3 ryanodine receptor 3 561350 5.1 2.7
 1.4
0.7
 1.1
0.6
 2.1
2.0
 1.7
1.5
 2.6
1.9
 1.0
0.3
 -0.3
-0.6
7 spag9a sperm associated antigen 9a 558833 5.0 2.6
 2.2
1.7
 0.5
 1.4
 1.7
 2.3
 1.3
 0.1
8 bin1b bridging integrator 1b 447863 5.0 2.6
 1.3
0.6
 0.8
0.6
 1.9
0.1
 2.3
1.0
 2.9
-0.4
 0.7
-0.6
 0.1
-0.2
9 ehbp1l1b EH domain binding protein 1-like 1b 100331563 4.7 2.5
 1.1
 -0.3
 -0.2
 -0.3
0.0
 0.0
10 LOC101886030 copine-8 101886030 4.6 2.4
 2.7
0.4
 -0.1
 -0.8
-1.9
 0.1
-0.8
 1.0
0.2
 0.1
-0.2
 2.0
11 pax7a paired box 7a 30587 4.5 2.4
 1.1
0.4
 0.4
 0.6
0.6
0.0

12 ccdc141 coiled-coil domain containing 141 553274 4.5 2.4
 1.5
2.6
 2.7
 2.0
 1.6
 0.8
13 ehbp1l1a EH domain binding protein 1-like 1a 557083 4.5 2.4
 3.1
0.6
 -0.2
 0.5
 0.9
 0.5
 -0.7
 -0.3
14 arid4b AT-rich interaction domain 4B 100537923 4.5 2.4
 2.7
0.7
 1.0
 0.4
0.3
 1.1
0.8
 -0.6
-1.6
 0.5
0.1
 0.6
-0.9
15 LOC100149084 uncharacterized LOC100149084 100149084 4.4 2.3
 2.0


1.3

16 kif3b kinesin family member 3B 100101641 4.4 2.3
 1.5
 0.7
 -0.2
 0.5
 0.2
 -0.6
 0.9
17 samd4a sterile alpha motif domain containing 4A 100149858 4.4 2.3
 0.9
0.4
 2.5
-0.2
 3.2
-0.9
 1.9
0.1
 1.8
-1.2
 1.0
0.3
 0.7
-0.3
18 plekha5 pleckstrin homology domain containing, family A member 5 567300 4.4 2.3
 1.8
-0.4
 -0.1


19 sdk1b sidekick cell adhesion molecule 1b 555553 4.3 2.3
 2.9
1.1
 0.5
-0.7
 2.4
0.1
 0.3
-0.1
 0.7
-0.6
 -0.1
-0.4
 1.2
0.9
20 mef2ca myocyte enhancer factor 2ca 30575 4.3 2.3
 2.2
1.9
 0.9
0.4
 2.5
1.1
 2.6
1.9
 2.7
1.8
 0.8
0.4
 2.5
1.3
21 rbm33a RNA binding motif protein 33a 100149667 4.3 2.3
 1.6
 -0.4
 -0.7
 0.7
 -0.1
 -0.5
 -0.1
22 pbxip1a pre-B-cell leukemia homeobox interacting protein 1a 563463 4.3 2.2






23 cacna2d1a calcium channel, voltage-dependent, alpha 2/delta subunit 1a 561434 4.2 2.2
 1.5
1.2
 0.2
 0.8
 2.8
0.6
 2.0
0.4
 0.5
-0.1
 1.3
1.1
24 dlg5b.1 discs, large homolog 5b (Drosophila), tandem duplicate 1 101883945 4.2 2.2
 2.2
1.0
 0.4
 1.8
 1.8
 0.6
 0.9
 1.3
25 fat3a FAT atypical cadherin 3a 569256 4.2 2.2
 2.1
1.7
 1.6
0.2
 2.8
2.2
 1.7
1.0
 0.6
0.4
 0.6
0.1
 1.7
1.6
26 zc3h6 zinc finger CCCH-type containing 6 559312 4.2 2.2
 1.8
 -0.0
-0.3
 -0.1
-1.0
 0.9
-1.0
 0.5
 1.3
0.1
 0.4
-0.8
27 l3mbtl3 L3MBTL histone methyl-lysine binding protein 3 403075 4.2 2.2
 2.0
1.1
 -1.0
 0.1
 -0.7
 1.1
-0.9
 1.4
-0.1
 -0.5
28 cita citron rho-interacting serine/threonine kinase a 100329792 4.2 2.2
 1.0
 -0.2
 0.2
 -0.5
 -0.1
 0.5
 -0.2
29 si:ch211-126j24.1 si:ch211-126j24.1 571137 4.1 2.2
 2.0
1.7
 0.8
0.4
 1.8
-0.2
 2.5
0.5
 1.7
-1.5
 0.5
-0.7
 2.1
0.6
30 srpk3 SRSF protein kinase 3 566605 4.1 2.2
 1.6
1.0
 0.8
0.7
 2.0
0.0
 1.8
0.5
 2.2
0.5
 0.7
0.4
 1.6
0.3
31 kmt2a lysine (K)-specific methyltransferase 2A 557048 4.1 2.2
 1.3
 0.2
 0.7
 0.6
 0.4
 -0.1
 -1.1
32 slc2a4rg SLC2A4 regulator 368491 4.1 2.2
 1.9
1.2
 4.1
0.3
 2.4
-1.2
 2.4
0.1
 1.3
0.6
 1.4
0.3
 0.5
-0.4
33 fyco1a FYVE and coiled-coil domain autophagy adaptor 1a 565649 4.1 2.2
 2.5
0.7
 0.7
 1.7
 1.1
 1.6
 0.6
 1.6
34 tln2a talin 2a 556842 4.1 2.2
 1.3
1.0
 0.9
0.1
 2.8
1.2
 2.6
0.2
 1.1
-1.1
 -0.6
-0.6
 0.8
0.0
35 nexn nexilin (F actin binding protein) 573301 4.1 2.2
 1.4
 0.8
 3.1
 1.8
 2.2
 0.2
 -0.1
36 nav1b neuron navigator 1b 100005000 4.0 2.1
 2.6
2.2
 1.6
1.5
 2.1
1.4
 1.6
1.1
 1.5
0.8
 2.6
1.1
 1.5
-0.7
37 cnksr2a connector enhancer of kinase suppressor of Ras 2a 561623 4.0 2.1
 1.5
0.6
 2.1
1.3
 1.5
-0.6
 2.0
0.2
 2.3
0.8
 0.7
0.5
 1.2
0.1
38 add1 adducin 1 (alpha) 555511 4.0 2.1
 2.6
1.6
 0.8
0.3
 1.8
1.1
 2.0
0.9
 1.8
0.7
 -0.3
-0.8
 1.3
-0.2
39 myo18aa myosin XVIIIAa 566880 4.0 2.1
 2.1
2.0
 1.9
 0.7
 2.3
 0.7
 -0.5
 0.3
40 slc8a3 solute carrier family 8 member 3 560561 4.0 2.1
 1.1
1.1
 0.4
-0.9
 1.7
-0.1
 3.6
1.3
 1.0
0.4
 1.3
0.0
 3.1
0.6
41 traf3ip1 TNF receptor-associated factor 3 interacting protein 1 393572 4.0 2.1
 1.7
 0.9
 0.1
 -0.3
 0.3
 1.1
 2.9
42 dchs1a dachsous cadherin-related 1a 100334632 4.0 2.1
 1.2
-0.4
 0.9
 1.8
1.8
 2.4
0.5
 0.3
 -0.3
 0.9
43 tns2b tensin 2b 565809 4.0 2.1
 2.0
1.4
 1.6
 1.2
 -0.3
 0.2
 0.3
 0.0
44 ryr1b ryanodine receptor 1b (skeletal) 570245 4.0 2.1
 1.4
0.7
 1.1
0.6
 2.1
2.0
 1.7
1.5
 2.6
1.9
 1.0
0.3
 -0.3
-0.6
45 daam2 dishevelled associated activator of morphogenesis 2 798465 3.9 2.1
 2.7
1.9
 1.5
1.0
 4.9
1.6
 3.5
1.4
 2.2
1.0
 0.4
0.4
 1.6
1.5
46 arvcfb ARVCF delta catenin family member b 564669 3.9 2.1
 3.4
0.1
 0.6
 0.9
 1.5
 2.8
 0.7
 1.5
47 LOC100332699 histone deacetylase 9-B-like 100332699 3.9 2.1






48 nf2b neurofibromin 2b (merlin) 405887 3.9 2.1
 2.7
2.0
 2.1
1.2
 2.0
1.0
 2.4
1.5
 0.8
0.7
 1.6
0.2
 0.8
0.3
49 cdc42bpab CDC42 binding protein kinase alpha (DMPK-like) b 566003 3.9 2.1
 4.2
3.6
 2.9
1.8
 2.5
1.5
 2.3
1.5
 1.5
1.1
 1.8
0.2
 2.6
1.1
50 rnf34b ring finger protein 34b 568879 3.9 2.1
 2.5
0.7
 -0.3
-1.0
 -0.6
-0.6
 0.7
0.6
 0.0
-0.5
 -0.3
-1.0
 -0.0
-0.3
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