Orthologous genes in OrthoFinder**

Species Gene Description
 cfa-u.3   COPS4   COP9 signalosome subunit 4 
 cfa-r.3   COPS4   COP9 signalosome subunit 4 
 hsa-u.4   COPS4   COP9 signalosome subunit 4 
 mmu-u.4   Cops4   COP9 signalosome subunit 4 
 rno-u.3   Cops4   COP9 signalosome subunit 4 
 mcc-u.3   COPS4   COP9 signalosome subunit 4 
 gga-u.3   COPS4   COP9 signalosome subunit 4 
 dre-u.3   cops4   COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) 
 dme-u.3   CSN4   COP9 signalosome subunit 4 
 cel-u.3   csn-4   COP9 signalosome complex subunit 4 
 spo-u.3   pnk1   DNA kinase/phosphatase Pnk1 

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Top 50 coexpressed genes to COPS4 (cfa-u.3 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 cfa3018   RNA degradation  3 70 2.82
 cfa130   Ubiquinone and other terpenoid-quinone biosynthesis  2 11 3.25
 cfa970   Aminoacyl-tRNA biosynthesis  2 42 2.08
 cfa4141   Protein processing in endoplasmic reticulum  3 170 -
 cfa5014   Amyotrophic lateral sclerosis  3 404 -

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cfa:COPS4 (COP9 signalosome subunit 4) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
UMAP
Gene Function KEGG Entrez
Gene
ID		 Other ID LINK Target Reference

cfa-u.3
for
COPS4
cfa-r.3
for
COPS4
hsa-u.4
for
COPS4
mmu-u.4
for
Cops4
rno-u.3
for
Cops4
mcc-u.3
for
COPS4
gga-u.3
for
COPS4
dre-u.3
for
cops4
dme-u.3
for
CSN4
cel-u.3
for
csn-4
spo-u.3
for
pnk1
1 COQ2 coenzyme Q2, polyprenyltransferase 478457 8.9 4.7
 3.2
 2.0
 -0.4
 2.0
 1.4
 1.2
 -0.8
 0.3
2 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 487893 8.8 4.7
 5.0
 4.3
 4.7
 3.2
 2.6
 0.8
-0.0
 2.3

3 SEC31A SEC31 homolog A, COPII coat complex component 478453 8.6 4.6
 3.8
-0.9
 4.1
-0.5
 0.9
0.5
 2.0
-0.3
 -0.5
-0.9
 -0.7
-0.8
 0.6
 0.5
 -0.1
-0.2
4 ACTR10 actin related protein 10 480337 7.0 3.7
 8.1
 4.2
 3.9
 3.5
 7.2
1.2
 1.5
 2.1
 1.4
 0.9
5 LOC102154096 uncharacterized LOC102154096 102154096 6.9 3.7








6 TAF11 TATA-box binding protein associated factor 11 474881 6.7 3.6
 2.2
 3.2
 2.5
0.5
 1.1
 1.2
 2.8
 2.1
 0.3
-0.5
7 TRMT10A tRNA methyltransferase 10A 487872 6.7 3.6
 2.0
 1.3
 1.6
 -0.4
 2.7
 2.6
 -2.1
 -1.2
 0.8
8 ENOPH1 enolase-phosphatase 1 478452 6.6 3.5
 4.1
 3.8
 0.3
 1.3
 2.3
 2.1
 1.8
 0.2
9 RARS1 arginyl-tRNA synthetase 1 609803 6.5 3.5
 5.6
 3.0
 3.8
 5.9
 3.6
 1.1
 0.1
 2.2
10 MATR3 matrin 3 474700 6.4 3.4
 4.6
 1.6
 2.3
 2.4
 2.2
 0.3


11 YME1L1 YME1 like 1 ATPase 477988 6.3 3.4
 2.3
 2.8
 0.1
 6.1
 1.5
 -0.3
-1.3
 1.8
 2.5
 -0.6
12 COPB2 COPI coat complex subunit beta 2 477088 6.3 3.3
 2.4
 4.1
 3.7
 5.1
 1.1
 1.1
 1.1
 0.5
 0.1
13 ATG5 autophagy related 5 610868 6.2 3.3
 3.6
 2.8
 2.1
 3.1
 1.4
 1.3
 2.5
 4.2
 -3.2
14 COMMD2 COMM domain containing 2 485713 6.1 3.2
 3.4
 1.4
 0.5
 1.5
 -0.3
 0.6
 1.4

15 COPS5 COP9 signalosome subunit 5 477901 6.0 3.2
 5.8
 5.5
 7.4
 5.8
 4.5
 6.2
 9.4
 1.0
0.6
 -0.9
16 TMED2 transmembrane p24 trafficking protein 2 100687986 6.0 3.2
 2.4
1.4
 1.8
1.6
 1.4
0.5
 3.0
2.1
 0.0
-1.0
 2.0
0.8
 0.6
0.1
 1.5
0.4
17 COQ3 coenzyme Q3, methyltransferase 475004 5.9 3.1
 4.5
 0.5
 3.2
 2.8
 -0.1
 -0.5
 1.7
 0.7
 0.6
18 VTA1 vesicle trafficking 1 612830 5.8 3.1
 5.9
 3.3
 5.2
 6.1
 2.6
 1.0
 1.0

19 USO1 USO1 vesicle transport factor 478430 5.8 3.1
 3.5
 2.5
 2.1
 4.3
 -0.4
 1.5
 3.4
 3.6
 0.3
20 PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 478504 5.7 3.0
 3.4
-0.3
 0.7
-0.6
 0.4
-0.5
 1.4
0.8
 0.7
-3.0
 0.3
-0.5
 -1.0
 -0.2
 2.3
21 METAP1 methionyl aminopeptidase 1 487871 5.7 3.0
 4.3
 3.7
 3.1
 0.5
 1.2
 0.7
 4.0
0.2
22 COPB1 COPI coat complex subunit beta 1 476866 5.6 3.0
 5.0
 3.0
 3.2
 5.3
 2.6
 3.3
 -0.1
 1.4
 0.3
23 SKP1 S-phase kinase associated protein 1 474682 5.6 3.0
 4.4
 3.6
 2.8
 4.5
 3.6
 4.0
 1.7
0.2
 2.2
2.1
 0.4
24 UFL1 UFM1 specific ligase 1 474999 5.6 3.0
 2.1
 2.8
 4.7
 2.9
 -1.0
 1.0
 0.4
 0.8
25 MRPL1 mitochondrial ribosomal protein L1 478443 5.5 3.0
 8.5
 4.6
 3.0
 4.4
 -0.2
 0.8
 2.6
 1.5
26 HIBCH 3-hydroxyisobutyryl-CoA hydrolase 607040 5.5 2.9
 2.7
 2.0
 1.3
 0.8
 -0.1
 0.5
 0.7
 1.3
 -0.0
27 C1D C1D nuclear receptor corepressor 612549 5.3 2.8
 2.8
 1.3
 0.4
 2.4
 1.5
 -0.3
0.3
 1.7
28 QRSL1 glutaminyl-tRNA amidotransferase subunit QRSL1 475014 5.3 2.8
 2.0
 1.2
 1.8
 1.1
 4.0
 0.7
 2.7
 0.9
29 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 609781 5.3 2.8
 5.7
0.5
 1.3
0.4
 3.0
1.2
 2.1
1.1
 1.0
-0.6
 0.1
 2.4
 2.6
30 CNOT7 CCR4-NOT transcription complex subunit 7 482895 5.2 2.8
 3.4
1.8
 2.5
2.3
 2.3
0.6
 2.6
1.2
 1.4
-1.0
 1.9
0.2
 0.9
 2.0
 1.1
31 HSPA14 heat shock protein family A (Hsp70) member 14 477996 5.2 2.8
 3.3
 1.4
 -1.7
 3.5
 2.2
 0.4


32 MRPL15 mitochondrial ribosomal protein L15 100856693 5.2 2.8
 3.4
 5.0
 3.3
 3.4
 2.7
 3.3
 0.9
 2.3
 0.5
33 RNF7 ring finger protein 7 106557459 5.2 2.8
 3.3
 2.8
 2.9
 2.8
 1.8
 1.6
 2.3
 0.3
34 NUP43 nucleoporin 43 484031 5.2 2.8
 0.4
 3.6
 3.9
 -0.7
 3.0
 2.5
 2.2

35 GOLT1B golgi transport 1B 612957 5.2 2.8
 0.0
-0.4
 1.9
-0.2
 -0.1
-0.5
 3.3
 0.4
-0.3
 1.6
-0.9
 0.7
 1.0
 -1.6
36 MRPL39 mitochondrial ribosomal protein L39 487709 5.2 2.8
 5.9
 2.9
 2.7
 3.5
 3.9
 0.7
 2.3
 1.1
37 CCT8 chaperonin containing TCP1 subunit 8 478399 5.2 2.7
 4.4
 4.2
 3.2
 5.8
 6.8
 1.9
 1.4
 4.7
 0.6
38 MMADHC metabolism of cobalamin associated D 476145 5.1 2.7
 5.5
 3.8
 3.3
 5.0
 -0.4
 1.3
0.9
 0.9
-0.4
 0.2
 -1.6
39 CNOT2 CCR4-NOT transcription complex subunit 2 474446 5.1 2.7
 1.1
1.9
 2.2
 3.7
 1.9
 1.2
0.4
 2.1
 0.4
40 NIPSNAP2 nipsnap homolog 2 479700 5.1 2.7
 3.4
1.4
 2.4
0.9
 0.9
-1.0
 1.3
0.6
 2.1
-0.3
 2.2
-0.4
 -0.2
 1.1
0.0
41 C27H12orf4 chromosome 27 C12orf4 homolog 477721 5.1 2.7
 3.7
 2.6
 1.9
 3.5
 3.2
 2.2
 -1.1
 2.0
42 SRP54 signal recognition particle 54 403953 5.1 2.7
 3.9
 5.5
2.1
 1.5
 5.1
 0.6
 0.8
 3.1
 2.6
 -1.2
43 LARP7 La ribonucleoprotein 7, transcriptional regulator 478519 5.1 2.7
 4.4
 2.1
 0.8
 2.4
 2.1
 1.4
 -0.4

44 SDHD succinate dehydrogenase complex subunit D 479438 5.0 2.7
 3.5
 2.6
 1.0
 2.6
 1.1
 1.8
-0.3
 -0.0
 0.6
 -0.2
45 VDAC3 voltage dependent anion channel 3 606963 5.0 2.7
 5.9
2.8
 5.0
4.2
 6.0
3.6
 7.0
4.4
 6.5
2.8
 0.4
0.3
 0.1
-0.3
 2.8
46 CCNG1 cyclin G1 479303 5.0 2.7
 2.8
1.5
 1.0
-0.8
 0.9
-1.7
 2.3
0.4
 2.7
-0.8
 -0.4
-1.0
 1.1

47 COMMD10 COMM domain containing 10 474635 5.0 2.7
 3.4
 3.1
 1.2
 0.8
 1.5
 2.1
 -0.3

48 UBXN4 UBX domain protein 4 476130 5.0 2.7
 0.5
 1.2
 3.7
 2.5
 2.2
 0.2
 0.3
 1.7
49 SCFD1 sec1 family domain containing 1 480281 4.9 2.6
 5.5
 4.7
 4.9
 6.5
 2.4
 4.9
 0.4
 3.9
 0.6
50 VBP1 VHL binding protein 1 481089 4.8 2.6
 6.2
 2.8
3.4
 1.6
 4.2
 1.6
 2.9
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