COXPRESdb

ver. 6.0

last update; Aug. 31. 2016

Statistics of COXPRESdb ver. 6.0

Coexpression data

Icon Species Coexpression data version Platform ArrayExpress Genes Samples GO score (E-4)* Codon score (E-2) * Reproducibility score (E-1) *
Caenorhabditis elegans Cel-m.c3-0
(Cel.c3-0)
GPL200 A-AFFY-60 17,256 1,528 4.2 2.5 2.8
Canis lupus familiaris Cfa-m.c2-0
(Cfa.c2-0)
GPL3738 A-AFFY-149 16,211   636 1.7 1.3
Drosophila melanogaster Dme-m.c3-0
(Dme.c3-0)
GPL1322 A-AFFY-35 12,626 4,741 5.2 2.2 2.5
Drosophila melanogaster Dme-r.c1-0
(Dme2.c1-0)
RNAseq RNAseq 13,099 754 4.3 2.3 2.5
Danio rerio Dre-m.c3-0
(Dre.c3-0)
GPL1319 A-AFFY-38 10,112 1,727 1.6 1.2
Gallus gallus Gga-m.c3-0
(Gga.c3-0)
GPL3213 A-AFFY-301 13,757 1,301 1.7 1.2
Homo sapiens Hsa-m.c4-0
(Hsa.c4-0)
GPL570 A-AFFY-44 19,803 73,083 2.6 1.8 2.7
Homo sapiens Hsa-m2.c2-0
(Hsa2.c2-0)
GPL6244 A-AFFY-141 19,788 12,640 3.1 3.0 3.1
Homo sapiens Hsa-r.c1-0
(Hsa3.c1-0)
RNAseq RNAseq 19,816 5,626 2.8 2.3 2.7
Macaca mulatta Mcc-m.c2-0
(Mcc.c2-0)
GPL3535 A-AFFY-145 15,781   875 1.8 1.5 1.2
Mus musculus Mmu-m.c3-0
(Mmu.c3-0)
GPL1261 A-AFFY-45 20,403 31,479 3.2 1.8 2.3
Mus musculus Mmu-r.c1-0
(Mmu2.c1-0)
RNAseq RNAseq 19,453 3,746 3.0 2.0 2.2
Rattus norvegicus Rno-m.c3-0
(Rno.c3-0)
GPL1355 A-AFFY-43 13,751 27,481 2.5 1.5 1.7
Saccharomyces cerevisiae Sce-m.c2-0
(Sce.c2-0)
GPL2529 A-AFFY-47 4,461 3,819 6.3 2.8 3.4
Schizosaccharomyces pombe Spo-m.c2-0
(Spo.c2-0)
GPL2529 A-AFFY-47 4,881   224 2.0 2.6

All coexpression data are downloadable. [Link]



Locus page

Species All pages with a network with a network
including KEGG annotation
with a network
including PPI
Total (ver.5.0) 145,038 53,957 38,830 6,867
Total (ver.4.1) 153,243 54,564 53,191 3,882
Human 43,617 19,803
Mouse 58,203 20,403    
Rat 43,218 13,751      

Most of the gene networks in locus page include common KEGG pathways.



Gene Ontology category page

Gene list Gene network
Pages (ver.5) 11,692 3,886
Pages (ver.4.1) 9,486 2,309


PPI

Human Mouse Rat
Genes with PPI data (ver.5) 11,521   2,180     943
Genes with PPI data (ver.4.1) 10,694   1,718     877

PPI data are derived from HPRD and IntAct.