GO:0006397 mRNA processing

309 dre genes in this database. All gene

[QuickGO]

term: mRNA processing
goid: GO:0006397

Shaded genes do not have GeneChip data. The output was limited up to 10000.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
dre cpsf4 cleavage and polyadenylation specific factor 4 30203
dre smn1 survival of motor neuron 1, telomeric 30432 IEA
dre qkia QKI, KH domain containing, RNA binding a 30471 IEA
dre clns1a chloride channel, nucleotide-sensitive, 1A 30699
dre cpeb1b cytoplasmic polyadenylation element binding protein 1b 30702 IEA
dre elavl4 ELAV like neuron-specific RNA binding protein 4 30737 IEA
dre celf3a cugbp, Elav-like family member 3a 57922 IEA
dre smx5 smx5 57924 IEA
dre coil coilin p80 58024
dre celf1 cugbp, Elav-like family member 1 58137 IEA
dre cpeb1a cytoplasmic polyadenylation element binding protein 1a 79079 IEA
dre srrt serrate RNA effector molecule homolog (Arabidopsis) 192311 IEA
dre ncbp2 nuclear cap binding protein subunit 2 192325 IEA
dre u2af1 U2 small nuclear RNA auxiliary factor 1 192328
dre snrpc small nuclear ribonucleoprotein polypeptide C 192330
dre snrpd1 small nuclear ribonucleoprotein D1 polypeptide 192331 IEA
dre fmr1 FMRP translational regulator 1 259191 IEA
dre jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase 266962 IEA
dre phf5a PHD finger protein 5A 286774
dre snu13b SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) 321114
dre ptbp1b polypyrimidine tract binding protein 1b 321220 IEA
dre prpf19 pre-mRNA processing factor 19 321544 IEA
dre prpf40a PRP40 pre-mRNA processing factor 40 homolog A 321555
dre rprd1b regulation of nuclear pre-mRNA domain containing 1B 321636
dre khdc4 KH domain containing 4, pre-mRNA splicing factor 321686 IEA
dre scnm1 sodium channel modifier 1 321696 IEA
dre snw1 SNW domain containing 1 321852 IEA
dre rbmx RNA binding motif protein X-linked 321860 IEA
dre srsf4 serine and arginine rich splicing factor 4 321872 IEA
dre xrn2 5'-3' exoribonuclease 2 321940 IEA,IEA
dre ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 321948 IEA
dre ik IK cytokine 322241
dre ptbp1a polypyrimidine tract binding protein 1a 323490 IEA
dre srpk1a SRSF protein kinase 1a 323679
dre srsf2b serine and arginine rich splicing factor 2b 323700
dre dbr1 debranching RNA lariats 1 323746 IEA
dre prpf6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) 323855 IEA
dre snrpa small nuclear ribonucleoprotein polypeptide A 324121 IEA
dre rbm5 RNA binding motif protein 5 324302 IEA
dre zmat2 zinc finger, matrin-type 2 324476
dre cpsf3 cleavage and polyadenylation specific factor 3 324554 IEA
dre gemin4 gem (nuclear organelle) associated protein 4 324754
dre tardbpb TAR DNA binding protein b 325052 IEA
dre thoc5 THO complex 5 325064 IEA
dre ddx39aa DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa 325550
dre prpf4 PRP4 pre-mRNA processing factor 4 homolog (yeast) 326944 IEA
dre snrpd3l small nuclear ribonucleoprotein D3 polypeptide, like 327011 IEA
dre rnps1 RNA binding protein S1, serine-rich domain 327020 IEA
dre cpsf6 cleavage and polyadenylation specific factor 6 327069 IEA
dre rbm25b RNA binding motif protein 25b 327336 IEA
dre wtap WT1 associated protein 334058 IEA
dre ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 334283
dre rprd2a regulation of nuclear pre-mRNA domain containing 2a 334701
dre larp7 La ribonucleoprotein 7, transcriptional regulator 334956 IEA
dre srsf5a serine and arginine rich splicing factor 5a 335396 IEA
dre thoc2 THO complex 2 368417 IEA
dre gpkow G patch domain and KOW motifs 368735 IEA
dre prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) 368864 IEA
dre srsf3a serine and arginine rich splicing factor 3a 368925
dre celf2 cugbp, Elav-like family member 2 373117 IEA
dre tardbpa TAR DNA binding protein a 386630 IEA
dre cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2 386806
dre rbm19 RNA binding motif protein 19 387255
dre cwf19l1 CWF19 like cell cycle control factor 1 387304
dre xab2 XPA binding protein 2 387600
dre cmtr1 cap methyltransferase 1 393102 IEA
dre ncbp3 nuclear cap binding subunit 3 393112 IEA
dre yju2 YJU2 splicing factor homolog 393117 IEA
dre smu1a SMU1 DNA replication regulator and spliceosomal factor a 393168 IEA
dre prpf4ba pre-mRNA processing factor 4Ba 393182
dre snu13a SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) 393282
dre cdc73 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 393319
dre fam172a family with sequence similarity 172 member A 393390 IEA
dre aqr aquarius intron-binding spliceosomal factor 393436 IEA
dre prmt7 protein arginine methyltransferase 7 393475
dre prpf31 PRP31 pre-mRNA processing factor 31 homolog (yeast) 393476 IEA
dre eftud2 elongation factor Tu GTP binding domain containing 2 393480 IEA
dre srsf10b serine and arginine rich splicing factor 10b 393505
dre srsf1b serine and arginine rich splicing factor 1b 393565 IEA
dre papolg poly(A) polymerase gamma 393593 IEA
dre lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 393669 IEA
dre ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase 393701 IEA
dre qki2 QKI, KH domain containing, RNA binding 2 393815 IEA
dre dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 393850
dre zgc:77614 zgc:77614 393868 IEA
dre rbm17 RNA binding motif protein 17 393889
dre ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 393917
dre crnkl1 crooked neck pre-mRNA splicing factor 1 393920
dre prpf8 pre-mRNA processing factor 8 393951 IEA
dre snrpe small nuclear ribonucleoprotein polypeptide E 393979 IEA
dre mfap1 microfibril associated protein 1 393992
dre sf3a2 splicing factor 3a, subunit 2 394018 IEA
dre ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 394020
dre eif4a3 eukaryotic translation initiation factor 4A3 394053 IEA
dre cdc5l CDC5 cell division cycle 5-like (S. pombe) 394059 IEA
dre tnpo3 transportin 3 394062 IMP
dre hnrnpl heterogeneous nuclear ribonucleoprotein L 394074 IEA
dre snapc3 small nuclear RNA activating complex, polypeptide 3 394090 IMP
dre nudt21 nudix hydrolase 21 394092 IBA,IEA,ISS
dre zgc:66388 zgc:66388 394116
dre sfswap splicing factor SWAP 394143
dre htatsf1 HIV-1 Tat specific factor 1 394178
dre tdrd3 tudor domain containing 3 402828 IEA
dre dcps decapping enzyme, scavenger 402850 IEA
dre rbm14b RNA binding motif protein 14b 402858 IEA
dre snrpb2 small nuclear ribonucleoprotein polypeptide B2 402896
dre wbp11 WW domain binding protein 11 402950 IEA
dre zgc:77262 zgc:77262 402952
dre snrpb small nuclear ribonucleoprotein polypeptides B and B1 402966
dre srsf7a serine and arginine rich splicing factor 7a 402972
dre u2af2b U2 small nuclear RNA auxiliary factor 2b 402989 IEA
dre casc3 casc3 exon junction complex subunit 403025 IEA
dre prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) 403072 IEA
dre papola poly(A) polymerase alpha 404041 IEA
dre mettl14 methyltransferase 14, N6-adenosine-methyltransferase subun 404603
dre rbm24a RNA binding motif protein 24a 405801 IEA,IMP
dre rngtt RNA guanylyltransferase and 5'-phosphatase 405803 IEA
dre srsf9 serine and arginine rich splicing factor 9 405835
dre rsrc1 arginine/serine-rich coiled-coil 1 405883
dre ddx39ab DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab 406249
dre rbm39a RNA binding motif protein 39a 406251 IEA
dre hnrpkl heterogeneous nuclear ribonucleoprotein K, like 406264 IEA
dre hnrnpk heterogeneous nuclear ribonucleoprotein K 406267 IEA
dre rbm4.3 RNA binding motif protein 4.3 406277
dre srsf1a serine and arginine rich splicing factor 1a 406288 IEA
dre cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 406326 IEA
dre rbm22 RNA binding motif protein 22 406495 IEA
dre rbfox2 RNA binding fox-1 homolog 2 406569 IEA
dre srsf2a serine and arginine rich splicing factor 2a 406691
dre cmtr2 cap methyltransferase 2 406742 IEA
dre srrm1 serine/arginine repetitive matrix 1 406751 IEA
dre prpf4bb pre-mRNA processing factor 4Bb 406758
dre cwc25 CWC25 spliceosome associated protein homolog 406771 IEA
dre prpf38b pre-mRNA processing factor 38B 406810 IEA
dre sf3b3 splicing factor 3b, subunit 3 406824 IEA
dre rbfox1l RNA binding fox-1 homolog 1, like 407613 IEA
dre slbp stem-loop binding protein 407727
dre pnn pinin, desmosome associated protein 407733 IEA
dre cwc15 CWC15 spliceosome associated protein homolog 415140 IEA
dre sf3b6 splicing factor 3b, subunit 6 415157 IEA
dre lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated 415167 IEA
dre snrpd3 small nuclear ribonucleoprotein D3 polypeptide 415171 IEA
dre luc7l LUC7-like (S. cerevisiae) 415206
dre puf60b poly-U binding splicing factor b 415211 IEA
dre prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) 431751 IEA
dre aar2 AAR2 splicing factor 431768
dre cpsf1 cleavage and polyadenylation specific factor 1 432372
dre polr2d RNA polymerase II subunit D 436588
dre cpsf2 cleavage and polyadenylation specific factor 2 436657 IEA
dre sf3b5 splicing factor 3b, subunit 5 436751 IEA
dre supt4h1 SPT4 homolog, DSIF elongation factor subunit 436782 IBA
dre celf4 CUGBP, Elav-like family member 4 436835 IEA
dre srsf5b serine and arginine rich splicing factor 5b 436883 IEA
dre sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP 436946
dre snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) 436976 IEA
dre tfip11 tuftelin interacting protein 11 436994 IEA
dre thoc7 THO complex 7 445035 IEA
dre syf2 SYF2 pre-mRNA-splicing factor 445043 IEA
dre zgc:91850 zgc:91850 445078 IEA
dre prpf38a pre-mRNA processing factor 38A 445089 IEA
dre lsm1 LSM1, U6 small nuclear RNA associated 445157 IEA,IEA
dre zmat5 zinc finger, matrin-type 5 445314 IEA
dre bud31 BUD31 homolog 445383 IEA
dre rbbp6 retinoblastoma binding protein 6 445396 IEA
dre snrnp70 small nuclear ribonucleoprotein 70 (U1) 445398
dre snrpf small nuclear ribonucleoprotein polypeptide F 445404 IEA
dre sf3b1 splicing factor 3b, subunit 1 446117 IEA
dre sf3a3 splicing factor 3a, subunit 3 446168
dre snrpg small nuclear ribonucleoprotein polypeptide G 447922 IEA
dre gpatch1 G patch domain containing 1 448925 IEA
dre wdr33 WD repeat domain 33 449009
dre rbfox1 RNA binding fox-1 homolog 1 449554 IEA
dre txnl4a thioredoxin-like 4A 449780 IEA
dre fip1l1b FIP1 like 1b (S. cerevisiae) 450021 IEA
dre pcf11 PCF11 cleavage and polyadenylation factor subunit 492341
dre slu7 SLU7 homolog, splicing factor 492495 IEA
dre snrpa1 small nuclear ribonucleoprotein polypeptide A' 492511
dre rbm41 RNA binding motif protein 41 492764
dre ythdc1 YTH domain containing 1 492769
dre bcas2 BCAS2 pre-mRNA processing factor 493614 IEA
dre srsf6b serine and arginine rich splicing factor 6b 494133
dre cdc40 cell division cycle 40 homolog (S. cerevisiae) 494534
dre rbm8a RNA binding motif protein 8A 503767 IEA
dre ptbp2a polypyrimidine tract binding protein 2a 541437 IEA
dre rbm39b RNA binding motif protein 39b 541556 IEA
dre snrpd2 small nuclear ribonucleoprotein D2 polypeptide 550244 IEA
dre zcrb1 zinc finger CCHC-type and RNA binding motif 1 550251 IEA
dre gemin2 gem (nuclear organelle) associated protein 2 550271 IEA
dre ptcd2 pentatricopeptide repeat domain 2 550275 IEA
dre snrnp25 small nuclear ribonucleoprotein 25 550385
dre prkrip1 PRKR interacting protein 1 550595 IEA
dre nova2 NOVA alternative splicing regulator 2 553201
dre rbmx2 RNA binding motif protein X-linked 2 553240
dre srek1ip1 SREK1-interacting protein 1 553315 IEA
dre ern1 endoplasmic reticulum to nucleus signaling 1 553551 IEA
dre tent2 terminal nucleotidyltransferase 2 553626 IEA
dre trnau1apa tRNA selenocysteine 1 associated protein 1a 553636
dre cnot6l CCR4-NOT transcription complex, subunit 6-like 553665 IEA
dre wbp4 WW domain binding protein 4 553723 IEA
dre arl6ip4 ADP-ribosylation factor-like 6 interacting protein 4 553796 IEA
dre nova1 NOVA alternative splicing regulator 1 555590
dre hnrnpm heterogeneous nuclear ribonucleoprotein M 555643
dre zgc:174354 zgc:174354 555814 IEA
dre ddx20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 556273 IEA
dre rprd2b regulation of nuclear pre-mRNA domain containing 2b 556426
dre ddx17 DEAD-box helicase 17 556764
dre u2af2a U2 small nuclear RNA auxiliary factor 2a 557103 IEA
dre si:dkey-86e18.1 si:dkey-86e18.1 557342
dre lgals3a lectin, galactoside binding soluble 3a 557373 IEA
dre rbm4.2 RNA binding motif protein 4.2 557528
dre sart3 spliceosome associated factor 3, U4/U6 recycling protein 558581 IEA
dre slbp2 stem-loop binding protein 2 558918
dre gcfc2 GC-rich sequence DNA-binding factor 2 559280
dre rbfox3b RNA binding fox-1 homolog 3b 559412 IEA
dre esrp1 epithelial splicing regulatory protein 1 560190 IEA
dre virma vir like m6A methyltransferase associated 560260 IEA
dre fip1l1a FIP1 like 1a (S. cerevisiae) 561900
dre rbm24b RNA binding motif protein 24b 562236 IMP
dre puf60a poly-U binding splicing factor a 562370 IEA
dre ptbp2b polypyrimidine tract binding protein 2b 562434 IEA
dre rnmt RNA (guanine-7-) methyltransferase 562801 IEA
dre mtpap mitochondrial poly(A) polymerase 563801
dre lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated 563948 IEA
dre tut1 terminal uridylyl transferase 1, U6 snRNA-specific 564388 IEA
dre bud13 BUD13 homolog 564510
dre clp1 cleavage factor polyribonucleotide kinase subunit 1 565621 IEA
dre rnpc3 RNA-binding region (RNP1, RRM) containing 3 565672 IEA
dre tsen34 TSEN34 tRNA splicing endonuclease subunit 565995 IEA
dre lsm8 LSM8 homolog, U6 small nuclear RNA associated 566017 IEA,IMP
dre cwc22 CWC22 spliceosome associated protein homolog 566033 IEA
dre scaf11 SR-related CTD-associated factor 11 566484
dre srpk3 SRSF protein kinase 3 566605
dre ern2 endoplasmic reticulum to nucleus signaling 2 567021 IEA
dre celf5a cugbp, Elav-like family member 5a 568052 IEA
dre rbm25a RNA binding motif protein 25a 568088 IEA
dre snrnp35 small nuclear ribonucleoprotein 35 (U11/U12) 569999
dre alkbh5 alkB homolog 5, RNA demethylase 570158 IBA,IEA,ISS
dre isy1 ISY1 splicing factor homolog 570205
dre sympk symplekin 570858 IEA
dre sf3b2 splicing factor 3b, subunit 2 570994
dre znf326 zinc finger protein 326 571228 IEA
dre zgc:165603 zgc:165603 571425 IEA
dre srsf7b serine and arginine rich splicing factor 7b 572211
dre smndc1 survival motor neuron domain containing 1 572679 IEA
dre sf1 splicing factor 1 572785 IEA
dre esrp2 epithelial splicing regulatory protein 2 572992 IEA
dre rbm4.1 RNA binding motif protein 4.1 573001
dre lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated 573047 IEA
dre si:dkey-27d5.5 si:dkey-27d5.5 573077 IEA
dre hnrnpl2 heterogeneous nuclear ribonucleoprotein L2 573096 IEA
dre pabpc1a poly(A) binding protein, cytoplasmic 1a 606498 IEA
dre dhx8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 606595 IEA
dre rbm26 RNA binding motif protein 26 619195 IEA
dre cwf19l2 CWF19 like cell cycle control factor 2 619271
dre txnl4b thioredoxin-like 4B 641329 IEA
dre luc7l3 LUC7-like 3 pre-mRNA splicing factor 724014
dre tsen2 TSEN2 tRNA splicing endonuclease subunit 767713 IEA
dre khdrbs2 KH domain containing, RNA binding, signal transduction associated 2 768147 IEA
dre usp39 ubiquitin specific peptidase 39 790924 IEA
dre srpk1b SRSF protein kinase 1b 791187
dre trnau1apb tRNA selenocysteine 1 associated protein 1b 791478
dre pan2 poly(A) specific ribonuclease subunit PAN2 792831 IEA
dre snip1 Smad nuclear interacting protein 793873
dre pdcd11 programmed cell death 11 794079 IEA
dre celf6 CUGBP Elav-like family member 6 794913 IEA
dre si:dkey-27d5.14 si:dkey-27d5.14 795381 IEA
dre zgc:174355 zgc:174355 795394 IEA
dre ybx1 Y box binding protein 1 795398 IEA
dre sf3a1 splicing factor 3a, subunit 1 796388 IEA
dre pqbp1 polyglutamine binding protein 1 796523 IEA
dre srrm4 serine/arginine repetitive matrix 4 796574 IBA,IEA,IMP
dre si:ch211-220i18.4 si:ch211-220i18.4 798392
dre ptbp3 polypyrimidine tract binding protein 3 798982 IEA
dre snrnp200 small nuclear ribonucleoprotein 200 (U5) 799690
dre gemin8 gem (nuclear organelle) associated protein 8 100000842
dre gemin6 gem (nuclear organelle) associated protein 6 100002528
dre si:ch211-156l18.6 si:ch211-156l18.6 100004008 IEA
dre thoc6 THO complex 6 100004014 IEA
dre lsm11 LSM11, U7 small nuclear RNA associated 100004030
dre zgc:174353 zgc:174353 100004335 IEA
dre mettl3 methyltransferase like 3 100004398
dre plrg1 pleiotropic regulator 1 100004402
dre zgc:174357 zgc:174357 100004662 IEA
dre si:dkey-27d5.4 si:dkey-27d5.4 100005062 IEA
dre tsen15 TSEN15 tRNA splicing endonuclease subunit 100005064 IEA
dre zrsr2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 100005490
dre magoh mago homolog, exon junction complex subunit 100005893 IEA
dre si:rp71-45g20.4 si:rp71-45g20.4 100006347 IEA
dre si:rp71-45g20.10 si:rp71-45g20.10 100006433 IEA
dre si:rp71-45g20.11 si:rp71-45g20.11 100006493 IEA
dre zgc:158803 zgc:158803 100038767
dre sugp1 SURP and G patch domain containing 1 100073344 IEA
dre pan3 poly(A) specific ribonuclease subunit PAN3 100126012 IEA
dre aurkaip1 aurora kinase A interacting protein 1 100126015 IBA
dre zgc:174356 zgc:174356 100137120 IEA
dre srsf3b serine and arginine rich splicing factor 3b 100145909
dre si:dkey-27d5.10 si:dkey-27d5.10 100151406 IEA
dre rbm27 RNA binding motif protein 27 100332262 IEA
dre celf3b cugbp, Elav-like family member 3b 100333973 IEA
dre si:ch211-114c17.1 si:ch211-114c17.1 100334796
dre qkib QKI, KH domain containing, RNA binding b 100462714 IEA
dre lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 100535720 IEA
dre si:dkey-23f9.8 si:dkey-23f9.8 100537403 IEA
dre si:dkey-23f9.9 si:dkey-23f9.9 100537627 IEA
dre si:dkey-23f9.12 si:dkey-23f9.12 100537692 IEA
dre si:dkey-23f9.11 si:dkey-23f9.11 100537805 IEA
dre rbfox3a RNA binding fox-1 homolog 3a 100538330 IEA
dre rbm10 RNA binding motif protein 10 101882554
dre celf5b cugbp, Elav-like family member 5b 101884815


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