COXPRESdb : Draw

NetworkDrawer Drawing coexpressed gene network in multiple query genes.

Entrez Gene IDs

example

Platform:
Disp. type:
Coex option:
PPI option:
Do not draw singlet nodes of query
No description for additional genes

This form draws coexpressed gene network in query genes. Input Entrez Gene IDs.
The example is 10 genes related to steroid biosynthetic process (GO:0006694)

Also produced is general tab-delimited file, Pajak file (.net) and Cytoscape file (.sif) to draw network using general stand-alone softwares.

output image

Making coexpressed gene list from coexpressed query genes

output image

Provided as
Search > CoExSearch
since 2010.02.10

GlobalViewer

Entrez Gene IDs

"GlobalViewer" is a tool that displays the co-expression relationships of all genes in two-dimensional space by using UMAP.
This tool allows the users to intuitively understand the relationships among sets of genes of interest in different species.

Hcluster Hierarchical clustering for query genes

Entrez Gene IDs

example

Platform:
Method:

This form performs hierarchical clustering for query genes. Input Entrez Gene IDs.

CoexViewer Coexpression viewer

Two Entrez Gene IDs

example
gene1: gene2:

Platform:

This form returns scatter plot of coexpression between two genes. Input two Entrez Gene IDs.

ExViewer Expression viewer

Entrez Gene ID for human and mouse

example
gene:

Platform:

This form returns expression pattern for the input gene. Input an Entrez Gene ID for human and mouse.

GOPathDrawer Drawing hierarchical structures of Gene Ontology terms

Gene Ontology IDs