Publication

Obayashi T, Kodate S, Hibara H, Kagaya Y, Kinoshita K. (2023) COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. Nucleic Acids Res. 51: D80-D87. PMID:36350658 DOI:10.1093/nar/gkac983

Obayashi T, Kagaya Y, Aoki Y, Tadaka S, Kinoshita K. (2019) COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. Nucleic Acids Res. 47: D55-D62. PMID:30462320 DOI:10.1093/nar/gky1155
Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, Kinoshita K. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. 43: D82-D86. PMID:25392420 DOI:10.1093/nar/gku1163
Obayashi T, Okamura Y, Ito S, Tadaka S, Motoike IN, Kinoshita K. (2013) COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Nucleic Acids Res. 41: D1014-D1020. PMID:23203868 DOI:10.1093/nar/gks1014
Obayashi T, Kinoshita K. (2011) COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. 39: D1016-D1022. PMID:21081562 DOI:10.1093/nar/gkq1147
Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K. (2008) COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. 36: D77-D82. PMID:17932064 DOI:10.1093/nar/gkm840

<For plants> Obayashi T, Hibara H, Kagaya Y, Aoki Y, Kinoshita K. (2022) ATTED-II v11: a plant gene coexpression database using a sample balancing technique by subagging of principal components. Plant Cell Physiology, 63: 869-881. PMID:35353884 DOI:10.1093/pcp/pcac041
<MR index> Obayashi T, Kinoshita K. (2009) Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res., 16: 249-260. PMID:19767600 DOI:10.1093/dnares/dsp016

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