Download subcellular localization predicted by WoLF PSORT

last update; Oct. 03. 2018

Download subcellular localization predicted by WoLF PSORT

COXPRESdb version	Normalized output for COXPRESdb	Original output of WoLF PSORT
ver.3.3	`ver3-3.WoLF.Hsa.norm ver3-3.WoLF.Mmu.norm ver3-3.WoLF.Rno.norm`	`ver3-3.WoLF.Hsa ver3-3.WoLF.Mmu ver3-3.WoLF.Rno`

Data format (Normalized output for COXPRESdb)

Example
XP_001129666.1 cyto 6 NP_037539.1 cyto 4, cysk 3, cyto_nucl 3 NP_057487.2 nucl 8 NP_127494.1 nucl 4, cyto_nucl 4, cyto 3 NP_001014834.1 nucl 3, cyto_nucl 3, cyto 2

Tab-delimitate text file
- 1st column; Parameter of kNN method for the prediction of mammals.
- 2nd column; Simplified output of prediction result.

To simplify original WoLF PSORT output, we applied following treatment.

Omit if (Score) < 5
(New score) = (Score) / (k) x 10
Use 1st, 2nd and 3rd (New score) if available

Data format (Original output of WoLF PSORT)

Example
# k used for kNN is: 32 XP_001129666.1 cyto 21, extr 4, pero 3, nucl 2, cysk 2, extr_plas 2 NP_037539.1 cyto 13, cysk 12, cyto_nucl 10, nucl 5 NP_057487.2 nucl 26, extr 2, cyto 2 NP_127494.1 nucl 14.5, cyto_nucl 14, cyto 12.5, pero 2

Example

# k used for kNN is: 32
XP_001129666.1 cyto 21, extr 4, pero 3, nucl 2, cysk 2, extr_plas 2
NP_037539.1 cyto 13, cysk 12, cyto_nucl 10, nucl 5
NP_057487.2 nucl 26, extr 2, cyto 2
NP_127494.1 nucl 14.5, cyto_nucl 14, cyto 12.5, pero 2

1st line; Parameter of kNN method for mammalian proteins.
Next lines; Refseq ID [space] prediction result