KEGG 03015 mRNA surveillance pathway

97  hsa genes in this database.
103  mmu genes in this database.
100  rno genes in this database.
75  gga genes in this database.
99  dre genes in this database.
80  dme genes in this database.
79  cel genes in this database.
98  mcc genes in this database.
96  cfa genes in this database.
48  sce genes in this database.
50  spo genes in this database.
98  fca genes in this database.

List of genes in hsa


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
1477 , Y_N CSTF1 cleavage stimulation factor subunit 1
1478 , N CSTF2 cleavage stimulation factor subunit 2
1479 , Y CSTF3 cleavage stimulation factor subunit 3
2107 , Y ETF1 eukaryotic translation termination factor 1
2521 , N FUS FUS RNA binding protein
2733 , Y GLE1 GLE1 RNA export mediator
2935 , Y_N GSPT1 G1 to S phase transition 1
4116 , Y MAGOH mago homolog, exon junction complex subunit
4440 , N MSI1 musashi RNA binding protein 1
4686 , S NCBP1 nuclear cap binding protein subunit 1
5042 , N PABPC3 poly(A) binding protein cytoplasmic 3
5411 , N PNN pinin, desmosome associated protein
5499 , Y PPP1CA protein phosphatase 1 catalytic subunit alpha
5500 , Y PPP1CB protein phosphatase 1 catalytic subunit beta
5501 , Y PPP1CC protein phosphatase 1 catalytic subunit gamma
5515 , Y PPP2CA protein phosphatase 2 catalytic subunit alpha
5516 , Y PPP2CB protein phosphatase 2 catalytic subunit beta
5518 , Y PPP2R1A protein phosphatase 2 scaffold subunit Aalpha
5519 , Y PPP2R1B protein phosphatase 2 scaffold subunit Abeta
5520 , N PPP2R2A protein phosphatase 2 regulatory subunit Balpha
5521 , Y PPP2R2B protein phosphatase 2 regulatory subunit Bbeta
5522 , K PPP2R2C protein phosphatase 2 regulatory subunit Bgamma
5523 , Y PPP2R3A protein phosphatase 2 regulatory subunit B''alpha
5525 , Y PPP2R5A protein phosphatase 2 regulatory subunit B'alpha
5526 , Y PPP2R5B protein phosphatase 2 regulatory subunit B'beta
5527 , N PPP2R5C protein phosphatase 2 regulatory subunit B'gamma
5528 , Y PPP2R5D protein phosphatase 2 regulatory subunit B'delta
5529 , Y PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon
5976 , Y UPF1 UPF1 RNA helicase and ATPase
7919 , Y_N DDX39B DExD-box helicase 39B
8106 , N PABPN1 poly(A) binding protein nuclear 1
8189 , N SYMPK symplekin
8731 , N RNMT RNA guanine-7 methyltransferase
8732 , Y RNGTT RNA guanylyltransferase and 5'-phosphatase
8761 , N PABPC4 poly(A) binding protein cytoplasmic 4
9775 , N EIF4A3 eukaryotic translation initiation factor 4A3
9887 , Y SMG7 SMG7 nonsense mediated mRNA decay factor
9939 , N RBM8A RNA binding motif protein 8A
10189 , S ALYREF Aly/REF export factor
10250 , N SRRM1 serine and arginine repetitive matrix 1
10284 , M SAP18 Sin3A associated protein 18
10482 , N NXF1 nuclear RNA export factor 1
10767 , Y HBS1L HBS1 like translational GTPase
10898 , Y CPSF4 cleavage and polyadenylation specific factor 4
10914 , Y PAPOLA poly(A) polymerase alpha
10921 , N RNPS1 RNA binding protein with serine rich domain 1
10978 , Y CLP1 cleavage factor polyribonucleotide kinase subunit 1
11051 , M NUDT21 nudix hydrolase 21
11052 , N CPSF6 cleavage and polyadenylation specific factor 6
11269 , Y DDX19B DEAD-box helicase 19B
22794 , N CASC3 CASC3 exon junction complex subunit
22916 , Y_N NCBP2 nuclear cap binding protein subunit 2
22985 , N ACIN1 apoptotic chromatin condensation inducer 1
23049 , N SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
23283 , N CSTF2T cleavage stimulation factor subunit 2 tau variant
23293 , Y SMG6 SMG6 nonsense mediated mRNA decay factor
23381 , N SMG5 SMG5 nonsense mediated mRNA decay factor
23435 , N TARDBP TAR DNA binding protein
23708 , Y_N GSPT2 G1 to S phase transition 2
26019 , Y_N UPF2 UPF2 regulator of nonsense mediated mRNA decay
26528 , N DAZAP1 DAZ associated protein 1
26986 , N PABPC1 poly(A) binding protein cytoplasmic 1
28227 , Y PPP2R3B protein phosphatase 2 regulatory subunit B''beta
29101 , M SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase
29107 , N NXT1 nuclear transport factor 2 like export factor 1
29894 , N CPSF1 cleavage and polyadenylation specific factor 1
51585 , N PCF11 PCF11 cleavage and polyadenylation factor subunit
51692 , Y CPSF3 cleavage and polyadenylation specific factor 3
53918 , N PELO pelota mRNA surveillance and ribosome rescue factor
53981 , Y CPSF2 cleavage and polyadenylation specific factor 2
55012 , Y PPP2R3C protein phosphatase 2 regulatory subunit B''gamma
55110 , Y MAGOHB mago homolog B, exon junction complex subunit
55308 , Y DDX19A DEAD-box helicase 19A
55339 , P WDR33 WD repeat domain 33
55844 , N PPP2R2D protein phosphatase 2 regulatory subunit Bdelta
55916 , N NXT2 nuclear transport factor 2 like export factor 2
56000 , N NXF3 nuclear RNA export factor 3
56001 , Y_N NXF2 nuclear RNA export factor 2
56903 , Y PAPOLB poly(A) polymerase beta
64895 , N PAPOLG poly(A) polymerase gamma
65109 , Y_N UPF3B UPF3B regulator of nonsense mediated mRNA decay
65110 , N UPF3A UPF3A regulator of nonsense mediated mRNA decay
79869 , N CPSF7 cleavage and polyadenylation specific factor 7
80335 , Y WDR82 WD repeat domain 82
80336 , N PABPC1L poly(A) binding protein cytoplasmic 1 like
81608 , N FIP1L1 factor interacting with PAPOLA and CPSF1
84305 , Y PYM1 PYM homolog 1, exon junction complex associated factor
124540 , N MSI2 musashi RNA binding protein 2
132430 , N PABPC4L poly(A) binding protein cytoplasmic 4 like
140886 , N PABPC5 poly(A) binding protein cytoplasmic 5
340529 , N PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A
390748 , N PABPN1L PABPN1 like, cytoplasmic
392517 , S NCBP2L nuclear cap binding protein subunit 2 like
642843 , S CPSF4L cleavage and polyadenylation specific factor 4 like
645974 , N PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B
728343 , Y_N NXF2B nuclear RNA export factor 2B
100529063 , N BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough


List of genes in mmu


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
13680 , Y_N Ddx19a DEAD box helicase 19a
14852 , Y_N Gspt1 G1 to S phase transition 1
14853 , Y_N Gspt2 G1 to S phase transition 2
17149 , Y Magoh mago homolog, exon junction complex core component
17690 , N Msi1 musashi RNA-binding protein 1
18458 , N Pabpc1 poly(A) binding protein, cytoplasmic 1
18459 , N Pabpc2 poly(A) binding protein, cytoplasmic 2
18789 , N Papola poly (A) polymerase alpha
18949 , N Pnn pinin
19045 , Y Ppp1ca protein phosphatase 1 catalytic subunit alpha
19046 , Y Ppp1cb protein phosphatase 1 catalytic subunit beta
19047 , Y Ppp1cc protein phosphatase 1 catalytic subunit gamma
19052 , Y Ppp2ca protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
19053 , Y Ppp2cb protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
19054 , Y Ppp2r3d protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
19704 , Y Upf1 UPF1 regulator of nonsense transcripts homolog (yeast)
19826 , N Rnps1 RNA binding protein with serine rich domain 1
20220 , N Sap18 Sin3-associated polypeptide 18
21681 , Y Alyref Aly/REF export factor
21770 , N Ppp2r5d protein phosphatase 2, regulatory subunit B', delta
24018 , M Rngtt RNA guanylyltransferase and 5'-phosphatase
26931 , Y Ppp2r5c protein phosphatase 2, regulatory subunit B', gamma
26932 , Y Ppp2r5e protein phosphatase 2, regulatory subunit B', epsilon
51786 , Y Cpsf2 cleavage and polyadenylation specific factor 2
51792 , Y Ppp2r1a protein phosphatase 2, regulatory subunit A, alpha
51796 , N Srrm1 serine/arginine repetitive matrix 1
52432 , Y_N Ppp2r2d protein phosphatase 2, regulatory subunit B, delta
53319 , P Nxf1 nuclear RNA export factor 1
53817 , Y_N Ddx39b DEAD box helicase 39b
54188 , Y Cpsf4 cleavage and polyadenylation specific factor 4
54196 , N Pabpn1 poly(A) binding protein, nuclear 1
54451 , P Cpsf3 cleavage and polyadenylation specificity factor 3
56009 , N Alyref2 Aly/REF export factor 2
56215 , N Acin1 apoptotic chromatin condensation inducer 1
56422 , Y Hbs1l Hbs1-like (S. cerevisiae)
56488 , N Nxt1 NTF2-related export protein 1
56522 , Y Papolb poly (A) polymerase beta (testis specific)
59032 , Y_N Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma
60365 , N Rbm8a RNA binding motif protein 8a
66441 , Y Magohb mago homolog B, exon junction complex core component
66899 , N Fip1l1 FIP1 like 1 (S. cerevisiae)
67031 , N Upf3a UPF3 regulator of nonsense transcripts homolog A (yeast)
67337 , Y_N Cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1
67543 , N Pabpc6 poly(A) binding protein, cytoplasmic 6
67897 , N Rnmt RNA (guanine-7-) methyltransferase
68092 , Y Ncbp2 nuclear cap binding protein subunit 2
68134 , N Upf3b UPF3 regulator of nonsense transcripts homolog B (yeast)
68188 , Y Sympk symplekin
68219 , M Nudt21 nudix (nucleoside diphosphate linked moiety X)-type motif 21
68991 , M Ssu72 Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
70248 , N Dazap1 DAZ associated protein 1
71978 , Y Ppp2r2a protein phosphatase 2, regulatory subunit B, alpha
72930 , N Ppp2r2b protein phosphatase 2, regulatory subunit B, beta
73699 , Y Ppp2r1b protein phosphatase 2, regulatory subunit A, beta
74320 , P Wdr33 WD repeat domain 33
74412 , N Gle1 GLE1 RNA export mediator (yeast)
74737 , N Pcf11 PCF11 cleavage and polyadenylation factor subunit
76626 , N Msi2 musashi RNA-binding protein 2
77305 , Y Wdr82 WD repeat domain containing 82
78428 , Y Pym1 PYM homolog 1, exon junction complex associated factor
83410 , Y Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau
83454 , N Nxf2 nuclear RNA export factor 2
93728 , N Pabpc5 poly(A) binding protein, cytoplasmic 5
94230 , N Cpsf1 cleavage and polyadenylation specific factor 1
98985 , Y Clp1 CLP1, cleavage and polyadenylation factor I subunit
103677 , N Smg6 SMG6 nonsense mediated mRNA decay factor
105083 , N Pelo pelota mRNA surveillance and ribosome rescue factor
108062 , Y Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2
170722 , N Nxf7 nuclear RNA export factor 7
192160 , N Casc3 cancer susceptibility candidate 3
192170 , N Eif4a3 eukaryotic translation initiation factor 4A3
216578 , N Papolg poly(A) polymerase gamma
225363 , Y Etf1 eukaryotic translation termination factor 1
225849 , Y Ppp2r5b protein phosphatase 2, regulatory subunit B', beta
226517 , N Smg7 SMG7 nonsense mediated mRNA decay factor
226849 , Y Ppp2r5a protein phosphatase 2, regulatory subunit B', alpha
228410 , Y Cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3
229512 , N Smg5 SMG5 nonsense mediated mRNA decay factor
230721 , N Pabpc4 poly(A) binding protein, cytoplasmic 4
230908 , N Tardbp TAR DNA binding protein
233789 , N Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
233908 , N Fus fused in sarcoma
234733 , M Ddx19b DEAD box helicase 19b
235542 , N Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha
237082 , S Nxt2 nuclear transport factor 2-like export factor 2
241989 , N Pabpc4l poly(A) binding protein, cytoplasmic 4-like
245545 , N Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A
245610 , N Nxf3 nuclear RNA export factor 3
269061 , N Cpsf7 cleavage and polyadenylation specific factor 7
269643 , N Ppp2r2c protein phosphatase 2, regulatory subunit B, gamma
326622 , N Upf2 UPF2 regulator of nonsense transcripts homolog (yeast)
381404 , N Pabpc1l poly(A) binding protein, cytoplasmic 1-like
382035 , N Pabpn1l poly(A)binding protein nuclear 1-like
432508 , N Cpsf6 cleavage and polyadenylation specific factor 6
433702 , N Ncbp1 nuclear cap binding protein subunit 1
434233 , Y Ppp1ccb protein phosphatase 1 catalytic subunit gamma B
668137 , N Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1
668382 , N Pabpc1l2b poly(A) binding protein, cytoplasmic 1-like 2B
100039815 , M Gm2436 predicted gene 2436
100039830 , M Gm2446 predicted gene 2446
100041953 , N Sap18b Sin3-associated polypeptide 18B
100043292 , Y Gm4340 predicted gene 4340
100861880 , Y Gm21293 predicted gene, 21293


List of genes in rno


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
24420 , N Gspt1 G1 to S phase transition 1
24668 , Y Ppp1ca protein phosphatase 1 catalytic subunit alpha
24669 , Y Ppp1cc protein phosphatase 1 catalytic subunit gamma
24672 , Y Ppp2ca protein phosphatase 2 catalytic subunit alpha
24673 , Y Ppp2cb protein phosphatase 2 catalytic subunit beta
25594 , Y Ppp1cb protein phosphatase 1 catalytic subunit beta
59087 , Y_N Nxf1 nuclear RNA export factor 1
60660 , M Ppp2r2b protein phosphatase 2, regulatory subunit B, beta
114612 , Y_N Ddx39b DExD-box helicase 39B
116697 , N Pabpn1 poly(A) binding protein, nuclear 1
117104 , N Ppp2r2a protein phosphatase 2, regulatory subunit B, alpha
117256 , N Ppp2r2c protein phosphatase 2, regulatory subunit B, gamma
117281 , Y Ppp2r1a protein phosphatase 2 scaffold subunit A alpha
171350 , N Pabpc1 poly(A) binding protein, cytoplasmic 1
246255 , N Ppp2r2d protein phosphatase 2, regulatory subunit B, delta
259170 , N Casc3 CASC3 exon junction complex subunit
259272 , N Msi1 musashi RNA-binding protein 1
287113 , N Rnps1 RNA binding protein with serine rich domain 1
287522 , N Smg6 SMG6 nonsense mediated mRNA decay factor
289582 , N Fip1l1 factor interacting with PAPOLA and CPSF1
290284 , N Sap18 Sin3A associated protein 18
291534 , N Rnmt RNA (guanine-7-) methyltransferase
291615 , N Pabpc2 poly(A) binding protein, cytoplasmic 2
291877 , M Nudt21 nudix hydrolase 21
292022 , Y_N Ddx19a DEAD-box helicase 19A
292295 , N Pabpc6 poly(A) binding protein, cytoplasmic 6
292683 , N Sympk symplekin
293408 , Y Hbs1l HBS1-like translational GTPase
294754 , N Pelo pelota mRNA surveillance and ribosome rescue factor
295010 , N Pabpc4l poly(A) binding protein, cytoplasmic 4-like
295284 , N Rbm8a RNA binding motif protein 8A
296219 , Y_N Nxt1 nuclear transport factor 2-like export factor 1
296351 , N Pabpc1l poly(A) binding protein, cytoplasmic 1-like
298075 , N Ncbp1 nuclear cap binding protein subunit 1
298385 , Y Magoh mago homolog, exon junction complex subunit
298510 , N Pabpc4 poly(A) binding protein, cytoplasmic 4
298648 , N Tardbp TAR DNA binding protein
298681 , M Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase
298916 , Y Cpsf3 cleavage and polyadenylation specific factor 3
299147 , Y Ppp2r5e protein phosphatase 2 regulatory subunit B', epsilon
299256 , Y Cpsf2 cleavage and polyadenylation specific factor 2
299811 , N Cpsf6 cleavage and polyadenylation specific factor 6
302405 , N Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A
302591 , N Nxf3 nuclear RNA export factor 3
304277 , Y Cpsf4 cleavage and polyadenylation specific factor 4
304300 , Y Papolb poly(A) polymerase beta
305586 , N Papolg poly(A) polymerase gamma
305884 , N Acin1 apoptotic chromatin condensation inducer 1
307503 , Y Etf1 eukaryotic translation termination factor 1
307524 , N Wdr33 WD repeat domain 33
307920 , N Pabpn1l poly(A)binding protein nuclear 1-like
308653 , Y Nxf2 nuclear RNA export factor 2
309179 , Y Ppp2r5b protein phosphatase 2, regulatory subunit B', beta
309338 , N Cstf2t cleavage stimulation factor subunit 2, tau variant
311166 , Y Clp1 cleavage factor polyribonucleotide kinase subunit 1
311670 , Y_N Cstf1 cleavage stimulation factor subunit 1
312754 , Y Ppp2r5a protein phosphatase 2, regulatory subunit B', alpha
313131 , M Rngtt RNA guanylyltransferase and 5'-phosphatase
313449 , N Upf3b UPF3B, regulator of nonsense mediated mRNA decay
313620 , N Srrm1 serine and arginine repetitive matrix 1
314417 , N Papola poly (A) polymerase alpha
314915 , Y RGD1309489 similar to Est1p-like protein B
315352 , Y Nxt2 nuclear transport factor 2-like export factor 2
315648 , Y Ppp2r1b protein phosphatase 2 scaffold subunit A beta
317385 , N Fus FUS RNA binding protein
360596 , N Msi2 musashi RNA-binding protein 2
360855 , N Smg7 SMG7 nonsense mediated mRNA decay factor
361176 , N Upf3a UPF3A, regulator of nonsense mediated mRNA decay
361271 , N Upf2 UPF2, regulator of nonsense mediated mRNA decay
361605 , N Pcf11 PCF11 cleavage and polyadenylation factor subunit
362098 , Y_N Gle1 GLE1 RNA export mediator
362178 , Y Cstf3 cleavage stimulation factor subunit 3
362739 , Y_N Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma
362836 , N Dazap1 DAZ associated protein 1
363122 , N Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha
363193 , M Ppp2r5d protein phosphatase 2, regulatory subunit B', delta
365407 , N Cpsf7 cleavage and polyadenylation specific factor 7
366790 , N Pym1 PYM homolog 1, exon junction complex associated factor
366952 , N Cpsf1 cleavage and polyadenylation specific factor 1
368070 , N Pnn pinin, desmosome associated protein
498002 , N RGD1561590 similar to SAP18
500697 , N RGD1565693 similar to GLE1-like, RNA export mediator isoform 1
501582 , Y_N Gspt2 G1 to S phase transition 2
501621 , N Nxf7 nuclear RNA export factor 7
680025 , N Nxf5 nuclear RNA export factor 5
681012 , N Smg5 SMG5 nonsense mediated mRNA decay factor
682033 , M Ppp2r3b protein phosphatase 2, regulatory subunit B'', beta
683927 , Y Cstf2 cleavage stimulation factor subunit 2
684558 , Y Upf1 UPF1, RNA helicase and ATPase
686295 , Y Wdr82 WD repeat domain 82
688288 , N Eif4a3 eukaryotic translation initiation factor 4A3
688518 , N Pabpc5 poly A binding protein, cytoplasmic 5
689116 , Y Ncbp2 nuclear cap binding protein subunit 2
690303 , Y Magohb mago homolog B, exon junction complex subunit
690585 , Y Alyref Aly/REF export factor
690693 , Y Ddx19b DEAD-box helicase 19B
691318 , Y Ppp2r5c protein phosphatase 2, regulatory subunit B', gamma
691397 , N Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase
100360200 , Y LOC100360200 cleavage and polyadenylation specific factor 4
100363225 , N LOC100363225 hypothetical LOC100363225


List of genes in gga


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
374206 , Y_N SAP18 Sin3A associated protein 18
374226 , Y MAGOH mago homolog, exon junction complex core component
395878 , N PAPOLB poly(A) polymerase beta
396019 , Y PPP1CB protein phosphatase 1 catalytic subunit beta
396021 , Y PPP2CB protein phosphatase 2 catalytic subunit beta
414144 , N FUS FUS RNA binding protein
415942 , M WDR82 WD repeat domain 82
416182 , Y ETF1 eukaryotic translation termination factor 1
416318 , Y PPP2CA protein phosphatase 2 catalytic subunit alpha
416350 , Y PPP2R2B protein phosphatase 2 regulatory subunit Bbeta
416494 , S CPSF4 cleavage and polyadenylation specific factor 4
416605 , Y SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase
416704 , N EIF4A3 eukaryotic translation initiation factor 4A3
416756 , N RNPS1 RNA binding protein with serine rich domain 1
416872 , Y PPP1CC protein phosphatase 1 catalytic subunit gamma
416979 , N MSI1 musashi RNA binding protein 1
417212 , P GLE1 GLE1, RNA export mediator
417667 , N MSI2 musashi RNA binding protein 2
417844 , N CPSF6 cleavage and polyadenylation specific factor 6
418670 , Y PPP2R3B protein phosphatase 2 regulatory subunit B''beta
418734 , N UPF3A UPF3A regulator of nonsense mediated mRNA decay
419021 , N PCF11 PCF11 cleavage and polyadenylation factor subunit
419100 , N UPF2 UPF2 regulator of nonsense transcripts homolog (yeast)
419189 , N PABPC1L poly(A) binding protein cytoplasmic 1 like
419331 , M CSTF1 cleavage stimulation factor subunit 1
419410 , M SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase
419453 , N TARDBP TAR DNA binding protein
419523 , Y PPP2R2A protein phosphatase 2 regulatory subunit Balpha
419674 , N PABPC4 poly(A) binding protein cytoplasmic 4
420119 , Y UPF1 UPF1, RNA helicase and ATPase
421046 , Y RNMT RNA guanine-7 methyltransferase
421250 , N PPP2R5D protein phosphatase 2 regulatory subunit B'delta
421372 , Y PPP2R5A protein phosphatase 2 regulatory subunit B'alpha
421595 , N CSTF3 cleavage stimulation factor subunit 3
421694 , Y HBS1L HBS1 like translational GTPase
421819 , Y RNGTT RNA guanylyltransferase and 5'-phosphatase
421929 , Y CPSF3 cleavage and polyadenylation specific factor 3
422214 , Y LOC422214 nuclear cap binding protein subunit 2, 20kDa
422258 , N CSTF2 cleavage stimulation factor subunit 2
422319 , N EPFIP1L re-mRNA 3'-end-processing factor FIP1-like
422346 , S NXT2 nuclear transport factor 2 like export factor 2
422754 , N FIP1L1 factor interacting with PAPOLA and CPSF1
422858 , N PPP2R2C protein phosphatase 2 regulatory subunit Bgamma
423131 , Y CLP1 cleavage and polyadenylation factor I subunit 1
423324 , Y PPP2R3C protein phosphatase 2 regulatory subunit B''gamma
423338 , N PNN pinin, desmosome associated protein
423416 , Y CPSF2 cleavage and polyadenylation specific factor 2
423460 , Y PPP2R5C protein phosphatase 2 regulatory subunit B'gamma
423512 , Y PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon
423970 , Y PPP2R2D protein phosphatase 2 regulatory subunit Bdelta
424444 , N SMG7 SMG7, nonsense mediated mRNA decay factor
424733 , N PPP2R3A protein phosphatase 2 regulatory subunit B''alpha
424753 , N WDR33 WD repeat domain 33
424889 , S NCBP2 nuclear cap binding protein subunit 2, 20kDa
425473 , N SMG5 SMG5, nonsense mediated mRNA decay factor
426014 , N CPSF7 cleavage and polyadenylation specific factor 7
426135 , N CASC3 cancer susceptibility candidate 3
426504 , Y_N DDX19 DEAD-box helicase 19
427266 , N DAZAP1 DAZ associated protein 1
427379 , N NCBP1 nuclear cap binding protein subunit 1
428216 , N SRRM1 serine and arginine repetitive matrix 1
430689 , Y_N PELO pelota homolog (Drosophila)
430997 , N PABPC1 poly(A) binding protein cytoplasmic 1
768522 , Y_N GSPT2 G1 to S phase transition 2
769028 , N PABPN1L poly(A) binding protein nuclear 1 like, cytoplasmic
769169 , Y ALYREF Aly/REF export factor
100857196 , N PAPOLG poly(A) polymerase gamma
100858156 , Y PPP1CA protein phosphatase 1 catalytic subunit alpha
100858231 , N UPF3B UPF3B regulator of nonsense mediated mRNA decay
100858240 , Y PYM1 PYM homolog 1, exon junction complex associated factor
100858636 , M NUDT21 nudix hydrolase 21
101748079 , N NXF1 nuclear RNA export factor 1
101750600 , N SMG6 SMG6 nonsense mediated mRNA decay factor
107050968 , N RBM8A RNA binding motif protein 8A
112531447 , S LOC112531447 polyadenylate-binding protein 2


List of genes in dre


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
30203 , Y cpsf4 cleavage and polyadenylation specific factor 4
192325 , Y ncbp2 nuclear cap binding protein subunit 2
192339 , Y ddx19b DEAD-box helicase 19b
266989 , Y etf1b eukaryotic translation termination factor 1b
321035 , N pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form)
321614 , M wdr82 WD repeat domain 82
323865 , N nxf1b nuclear RNA export factor 1b
324238 , Y cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1
324267 , Y hbs1l HBS1-like translational GTPase
324554 , Y cpsf3 cleavage and polyadenylation specific factor 3
325052 , N tardbpb TAR DNA binding protein b
325284 , Y gspt1l G1 to S phase transition 1, like
327020 , N rnps1 RNA binding protein S1, serine-rich domain
327069 , N cpsf6 cleavage and polyadenylation specific factor 6
327263 , N ppp2r2ab protein phosphatase 2, regulatory subunit B, alpha b
327301 , Y ppp1cab protein phosphatase 1, catalytic subunit, alpha isozyme b
327495 , N acin1b apoptotic chromatin condensation inducer 1b
327625 , N pabpc1l poly(A) binding protein, cytoplasmic 1-like
334597 , Y ppp1cbl protein phosphatase 1, catalytic subunit, beta isoform, like
368893 , N acin1a apoptotic chromatin condensation inducer 1a
373878 , Y ppp2r5eb protein phosphatase 2, regulatory subunit B', epsilon isoform b
373881 , Y ppp2r5ea protein phosphatase 2, regulatory subunit B', epsilon isoform a
386630 , N tardbpa TAR DNA binding protein a
386806 , S cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2
393100 , Y ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma
393566 , N pym1 PYM homolog 1, exon junction complex associated factor
393593 , N papolg poly(A) polymerase gamma
393693 , N sap18 Sin3A-associated protein
393701 , M ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase
393856 , N pabpc1b poly A binding protein, cytoplasmic 1 b
393885 , Y ppp2cab protein phosphatase 2 catalytic subunit alpha b
393917 , Y ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
393929 , N upf3b UPF3B regulator of nonsense mediated mRNA decay
394053 , N eif4a3 eukaryotic translation initiation factor 4A3
394058 , N fus FUS RNA binding protein
394084 , N msi2b musashi RNA-binding protein 2b
394092 , M nudt21 nudix hydrolase 21
394111 , Y pelo pelota mRNA surveillance and ribosome rescue factor
403025 , N casc3 casc3 exon junction complex subunit
404041 , Y papola poly(A) polymerase alpha
405803 , M rngtt RNA guanylyltransferase and 5'-phosphatase
405816 , N ppp2r2d protein phosphatase 2, regulatory subunit B, delta
406326 , Y cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3
406543 , N pabpn1 poly(A) binding protein, nuclear 1
406582 , Y ppp2cb protein phosphatase 2, catalytic subunit, beta isozyme
406610 , N ppp2r5d protein phosphatase 2, regulatory subunit B', delta
406685 , Y ppp2r1ba protein phosphatase 2, regulatory subunit A, beta a
406751 , N srrm1 serine/arginine repetitive matrix 1
406783 , Y upf1 UPF1 RNA helicase and ATPase
407733 , N pnn pinin, desmosome associated protein
407980 , S ppp1caa protein phosphatase 1, catalytic subunit, alpha isozyme a
432372 , P cpsf1 cleavage and polyadenylation specific factor 1
436657 , N cpsf2 cleavage and polyadenylation specific factor 2
445408 , N gle1 GLE1 RNA export mediator
445485 , Y gspt1 G1 to S phase transition 1
449009 , P wdr33 WD repeat domain 33
449548 , Y ppp2r1bb protein phosphatase 2, regulatory subunit A, beta b
450021 , N fip1l1b FIP1 like 1b (S. cerevisiae)
492341 , N pcf11 PCF11 cleavage and polyadenylation factor subunit
503755 , N msi1a musashi RNA binding protein 1a
503767 , N rbm8a RNA binding motif protein 8A
541389 , N msi1b musashi RNA binding protein 1b
550585 , Y ppp2caa protein phosphatase 2 catalytic subunit alpha a
553261 , P smg5 SMG5 nonsense mediated mRNA decay factor
557208 , N ppp2r5cb protein phosphatase 2, regulatory subunit B', gamma b
558752 , N ppp2r2aa protein phosphatase 2, regulatory subunit B, alpha a
558760 , N taf15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
558810 , N ppp2r2bb protein phosphatase 2, regulatory subunit B, beta b
559392 , Y ppp2r2cb protein phosphatase 2, regulatory subunit B, gamma b
560127 , Y_N alyref Aly/REF export factor
561459 , N dazap1 DAZ associated protein 1
561900 , N fip1l1a FIP1 like 1a (S. cerevisiae)
562282 , Y ppp2r5b protein phosphatase 2, regulatory subunit B', beta
562460 , Y ppp2r5a protein phosphatase 2, regulatory subunit B', alpha isoform
562801 , N rnmt RNA (guanine-7-) methyltransferase
563172 , Y etf1a eukaryotic translation termination factor 1a
563448 , Y ddx19a DEAD-box helicase 19a
565575 , Y smg7 SMG7 nonsense mediated mRNA decay factor
565621 , Y clp1 cleavage factor polyribonucleotide kinase subunit 1
565849 , Y ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha
566032 , Y ppp2r3b protein phosphatase 2, regulatory subunit B'', beta
566608 , N upf3a UPF3A regulator of nonsense mediated mRNA decay
569006 , N upf2 UPF2 regulator of nonsense mediated mRNA decay
569810 , P smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
570858 , N sympk symplekin
571753 , Y ppp1cc protein phosphatase 1, catalytic subunit, gamma isozyme
606498 , N pabpc1a poly(A) binding protein, cytoplasmic 1a
751719 , M nxf1a nuclear RNA export factor 1a
751738 , S nxt2 nuclear transport factor 2-like export factor 2
796580 , N pabpn1l PABPN1 like, cytoplasmic
100001644 , N ppp2r2ba protein phosphatase 2, regulatory subunit B, beta a
100002680 , N msi2a musashi RNA-binding protein 2a
100002802 , N ppp2r2ca protein phosphatase 2, regulatory subunit B, gamma a
100003223 , Y ppp1cb protein phosphatase 1, catalytic subunit, beta isozyme
100005893 , Y magoh mago homolog, exon junction complex subunit
100005981 , Y ppp2r5ca protein phosphatase 2, regulatory subunit B', gamma a
100334020 , Y smg6 SMG6 nonsense mediated mRNA decay factor
100537556 , N LOC100537556 RNA-binding protein Musashi homolog 1-like
103909923 , LOC103909923 RNA-binding protein with serine-rich domain 1


List of genes in dme


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
31625 , N nonC no-on-and-no-off transient C
31724 , Y Upf2 Upf2
32153 , Y Upf1 Upf1 RNA helicase
32379 , N mRNA-cap mRNA-capping-enzyme
32587 , Y_N caz cabeza
32659 , Y_N CG32568 uncharacterized protein
32973 , Y Ssu72 Ssu72 CTD phosphatase
33259 , S Clp Clipper
33437 , Y CG3515 uncharacterized protein
33781 , X Hel25E Helicase at 25E
33968 , N Hrb27C Heterogeneous nuclear ribonucleoprotein at 27C
34153 , Y Wdr82 WD repeat domain 82
34286 , N pelo pelota
34658 , Y eRF3 eukaryotic translation release factor 3
34667 , N Ref2 RNA and export factor binding protein 2
34804 , Y Smg5 Smg5 nonsense mediated mRNA decay factor
34877 , Y Rnmt RNA guanine-7 methyltransferase
35173 , N Acn Acinus
35788 , N Pabp2 Pabp2
35849 , Y Gle1 Gle1 RNA export mediator
35924 , Y_N tsu tsunagi
36494 , Y cbc crowded by cid
36658 , N Pcf11 Pcf11 cleavage and polyadenylation factor subunit
37070 , N pAbp poly(A) binding protein
37402 , Y mago mago nashi
37493 , Y PpN58A Protein phosphatase N at 58A
37769 , S Nxt1 NTF2-related export protein 1
37780 , N Pym Partner of Y14 and Mago
37781 , N TBPH TAR DNA-binding protein-43 homolog
37792 , N Upf3 Upf3
38937 , N Cpsf6 Cleavage and polyadenylation specific factor 6
39083 , Y Cpsf5 Cleavage and polyadenylation specific factor 5
39483 , N Srrm1 Serine-arginine repetitive matrix 1
39665 , N cocoon cocoon
39919 , N Rbp6 RNA-binding protein 6
40240 , Y eRF1 eukaryotic translation release factor 1
40569 , N Fip1 Factor interacting with poly(A) polymerase 1
40698 , N Wdr33 WD repeat domain 33
40709 , Y Sym Symplekin
40884 , Y nxf4 nuclear export factor 4
40987 , N CG7483 uncharacterized protein
41147 , N RnpS1 RNA-binding protein S1
41185 , N Pnn Pinin
41668 , N Rbp4 RNA-binding protein 4
41965 , Y Bin1 Bicoid interacting protein 1
42166 , S Cbp20 cap binding protein 20
42169 , N wrd well-rounded
42239 , Y_N CstF64 Cleavage stimulation factor 64 kD subunit
42240 , Y Cpsf73 Cleavage and polyadenylation specificity factor 73
42368 , M CG4733 uncharacterized protein
42539 , Y CG7907 uncharacterized protein
42922 , Y Pp1alpha-96A Protein phosphatase 1alpha at 96A
42994 , M Smg6 Smg6
43087 , N msi musashi
43231 , N Rb97D Ribonuclear protein at 97D
43312 , M wdb widerborst
43331 , N btz barentsz
43426 , Y Cpsf100 Cleavage and polyadenylation specificity factor 100
43734 , N CstF50 Cleavage stimulation factor 50 kD subunit
43944 , Y sbr small bristles
44029 , N Ref1 RNA and export factor binding protein 1
44148 , N PpD5 Protein phosphatase D5
44250 , Y Cpsf160 Cleavage and polyadenylation specificity factor 160
44289 , Y flw flapwing
44409 , N Cbp80 cap binding protein 80
45959 , Y mts microtubule star
47877 , N tws twins
48531 , Y Pp1-13C Protein phosphatase 1 at 13C
48532 , Y PpY-55A Protein phosphatase Y at 55A
49260 , Y Pp1-87B Protein phosphatase 1 at 87B
49636 , N hrg hiiragi
49780 , K PpD6 Protein phosphatase D6
117365 , N HBS1 HBS1
317878 , Y Nxf3 Nuclear export factor 3
2768940 , K Pp2A-29B Protein phosphatase 2A at 29B
3354919 , Y Dbp80 Dead box protein 80
3354994 , Y su(f) suppressor of forked
3355173 , Y Pp1-Y2 Protein phosphatase 1, Y-linked 2
5740113 , Y Pp1-Y1 Protein phosphatase 1, Y-linked 1
5740122 , N CG34334 uncharacterized protein


List of genes in cel


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
171696 , Y smg-2 Regulator of nonsense transcripts 1
171866 , N nxt-1 NTF2 domain-containing protein;NTF2-related export protein
171960 , Y gsp-4 Serine/threonine-protein phosphatase PP1-delta
172030 , N acin-1 ACINus (mammalian Apoptotic Chromatin condensation Inducer in the Nucleus) homolog
172082 , Y gsp-3 Serine/threonine-protein phosphatase PP1-gamma
172258 , N F33D11.10 RNA helicase
172345 , N ncbp-1 Nuclear cap-binding protein subunit 1
172418 , N smg-1 Serine/threonine-protein kinase smg-1
172657 , Y_N cfim-1 Cleavage and polyadenylation specificity factor subunit 5
172672 , Y K07A12.4 Tr-type G domain-containing protein
172768 , N pabp-2 RRM domain-containing protein
172814 , Y_N cel-1 mRNA guanylyltransferase
172826 , Y_N sur-6 Serine/threonine-protein phosphatase 2A regulatory subunit sur-6
172886 , Y rsa-1 Serine/threonine-protein phosphatase 2A regulatory subunit rsa-1
172920 , N pab-1 Polyadenylate-binding protein
173013 , N rsr-1 PWI domain-containing protein
173073 , Y mag-1 Protein mago nashi homolog
173203 , N casc-3 Protein CASC3
173921 , Y EEED8.4 Putative RNA-binding protein EEED8.4
173922 , Y EEED8.12 Putative RNA-binding protein EEED8.12
174333 , Y hel-1 Spliceosome RNA helicase DDX39B homolog
174378 , N cpf-1 WD_REPEATS_REGION domain-containing protein
174380 , Y suf-1 Suf domain-containing protein
174418 , Y ddx-19 RNA helicase
174436 , N tdp-1 Tar DNA-binding protein homolog 1
174513 , Y pap-2 Poly(A) polymerase
174546 , N C05C10.2 AAA_12 domain-containing protein;putative ATP-dependent helicase C05C10.2
174561 , K F52H3.6 Serine/threonine-protein phosphatase
174816 , N pap-3 Poly(A) polymerase
175092 , N pfs-2 pre-mRNA 3' end processing protein pfs-2
175244 , N rnp-5 RRM domain-containing protein
175367 , N smg-6 PINc domain-containing protein
175442 , Y clpf-1 Clp1 domain-containing protein;Protein clpf-1
175514 , N msi-1 MuSashI (fly neural) family
175534 , Y C16C10.4 putative histone deacetylase complex subunit SAP18
175572 , Y rnp-4 RNA-binding protein 8A
175750 , K paa-1 putative serine/threonine-protein phosphatase PP2A regulatory subunit
176742 , N cpf-2 RRM domain-containing protein
177003 , N cpsf-1 CPSF_A domain-containing protein;putative cleavage and polyadenylation specificity factor subunit 1
177260 , Y sgnh-1 RRM domain-containing protein
177283 , Y C02B10.4 RRM domain-containing protein
177397 , P smg-3 Suppressor with Morphological effect on Genitalia
177435 , Y smg-7 TPR_REGION domain-containing protein
177489 , Y C34D4.2 Serine/threonine-protein phosphatase
177561 , Y swd-2.2 WD_REPEATS_REGION domain-containing protein
177710 , N cfim-2 Cleavage Factor IM (CFIm) homolog
177735 , M aly-1 FoP_duplication domain-containing protein
177738 , N aly-2 FoP_duplication domain-containing protein
178117 , S let-92 Serine/threonine-protein phosphatase 2A catalytic subunit
178151 , S cpsf-4 Cleavage and polyadenylation specificity factor subunit 4
178157 , N aly-3 FoP_duplication domain-containing protein
178285 , Y cpsf-3 Cleavage and Polyadenylation Specificity Factor
178835 , N fipp-1 Fip1 domain-containing protein
179028 , Y erfa-1 Eukaryotic peptide chain release factor subunit 1
179103 , N cpsf-2 putative cleavage and polyadenylation specificity factor subunit 2
179371 , N smg-4 Smg4_UPF3 domain-containing protein
179458 , N pap-1 Poly(A) polymerase
179486 , Y gsp-1 Serine/threonine-protein phosphatase PP1-alpha
179526 , N pptr-2 Serine/threonine protein phosphatase 2A regulatory subunit
179537 , Y erfa-3 GTP_EFTU_D3 domain-containing protein;Tr-type G domain-containing protein
179783 , N pnn-1 Pinin_SDK_memA domain-containing protein
179938 , M nxf-2 Nuclear RNA export factor 2
180100 , Y pptr-1 Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1
181473 , N pab-2 Polyadenylate-binding protein
181721 , Y_N F43B10.1 Uncharacterized protein
182242 , Y pph-1 Serine/threonine-protein phosphatase
182476 , Y C09H5.7 Serine/threonine-protein phosphatase
182490 , N symk-1 SYMpleKin cleavage and polyadenylation factor
182875 , Y_N tag-72 mRNA cap guanine-N7 methyltransferase
184953 , Y ncbp-2 Nuclear cap-binding protein subunit 2
187888 , Y pelo-1 Protein pelota homolog
188472 , Y ssup-72 RNA polymerase II subunit A C-terminal domain phosphatase ssup-72
188557 , Y T16G12.7 Serine/threonine-protein phosphatase
188661 , Y T20G5.9 Partner of Y14 and mago
190485 , N Y65B4A.6 RNA helicase
191467 , Y ZK938.1 Serine/threonine-protein phosphatase
191736 , N nxf-1 Nuclear RNA export factor 1
246008 , Y pcf-11 CID domain-containing protein;Polyadenylation and cleavage factor homolog 11
3564807 , Y gsp-2 Serine/threonine-protein phosphatase PP1-beta


List of genes in mcc


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
641447 , N PAPOLA poly(A) polymerase alpha
693542 , N SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
693730 , N CPSF7 cleavage and polyadenylation specific factor 7
693842 , Y_N UPF2 UPF2 regulator of nonsense mediated mRNA decay
693880 , Y LOC693880 nuclear RNA export factor 2-like
694036 , Y CPSF3 cleavage and polyadenylation specific factor 3
694040 , Y CSTF3 cleavage stimulation factor subunit 3
694247 , Y_N UPF3B UPF3B regulator of nonsense mediated mRNA decay
694616 , Y_N PPP2R3C protein phosphatase 2 regulatory subunit B''gamma
695118 , Y PPP2CB protein phosphatase 2 catalytic subunit beta
695351 , Y NXF3 nuclear RNA export factor 3
695433 , N PABPC4L poly(A) binding protein cytoplasmic 4 like
695816 , N RNPS1 RNA binding protein with serine rich domain 1
696409 , N PABPC5 poly(A) binding protein cytoplasmic 5
697708 , Y WDR82 WD repeat domain 82
697725 , N FIP1L1 factor interacting with PAPOLA and CPSF1
697875 , Y CPSF2 cleavage and polyadenylation specific factor 2
698279 , S CPSF4L cleavage and polyadenylation specific factor 4 like
699163 , N PPP2R5D protein phosphatase 2 regulatory subunit B'delta
699286 , N MSI1 musashi RNA binding protein 1
699520 , N PPP2R2D protein phosphatase 2 regulatory subunit Bdelta
699696 , N WDR33 WD repeat domain 33
699712 , N CASC3 CASC3 exon junction complex subunit
700296 , N PNN pinin, desmosome associated protein
701235 , N CSTF2 cleavage stimulation factor subunit 2
702082 , N CPSF1 cleavage and polyadenylation specific factor 1
702334 , Y RNGTT RNA guanylyltransferase and 5'-phosphatase
702348 , M SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase
703043 , S NCBP2L nuclear cap binding protein subunit 2 like
703078 , N SAP18 Sin3A associated protein 18
703302 , Y PPP1CB protein phosphatase 1 catalytic subunit beta
703468 , Y CSTF2T cleavage stimulation factor subunit 2 tau variant
704490 , N PCF11 PCF11 cleavage and polyadenylation factor subunit
704593 , N NXT2 nuclear transport factor 2 like export factor 2
705071 , Y CLP1 cleavage factor polyribonucleotide kinase subunit 1
705847 , N PABPC1 poly(A) binding protein cytoplasmic 1
705906 , N PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B
706140 , N LOC706140 nuclear RNA export factor 2
706440 , Y_N CSTF1 cleavage stimulation factor subunit 1
706748 , Y HBS1L HBS1 like translational GTPase
706988 , N PPP2R2B protein phosphatase 2 regulatory subunit Bbeta
707132 , N DAZAP1 DAZ associated protein 1
707828 , M NUDT21 nudix hydrolase 21
708119 , Y CPSF4 cleavage and polyadenylation specific factor 4
708148 , Y PYM1 PYM homolog 1, exon junction complex associated factor
708260 , Y NCBP2 nuclear cap binding protein subunit 2
708443 , N LOC708443 polyadenylate-binding protein 1
708583 , Y PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon
708617 , N PABPC3 poly(A) binding protein cytoplasmic 3
709576 , Y LOC709576 ATP-dependent RNA helicase DDX19B
709587 , M LOC709587 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta
709935 , Y PPP1CC protein phosphatase 1 catalytic subunit gamma
710326 , Y PPP2CA protein phosphatase 2 catalytic subunit alpha
710387 , M PPP2R1B protein phosphatase 2 scaffold subunit Abeta
711023 , N PPP2R2C protein phosphatase 2 regulatory subunit Bgamma
711846 , N NXT1 nuclear transport factor 2 like export factor 1
711882 , N PABPC1L poly(A) binding protein cytoplasmic 1 like
711920 , Y PPP2R2A protein phosphatase 2 regulatory subunit Balpha
712141 , N EIF4A3 eukaryotic translation initiation factor 4A3
712258 , N SRRM1 serine and arginine repetitive matrix 1
712525 , Y_N DDX19A DEAD-box helicase 19A
713310 , N ACIN1 apoptotic chromatin condensation inducer 1
713433 , N FUS FUS RNA binding protein
713572 , M LOC713572 polyadenylate-binding protein 2
714261 , Y MAGOH mago homolog, exon junction complex subunit
714449 , Y ETF1 eukaryotic translation termination factor 1
714852 , Y ALYREF Aly/REF export factor
715233 , Y_N DDX39B DExD-box helicase 39B
716083 , N PABPC4 poly(A) binding protein cytoplasmic 4
716313 , Y PPP2R5A protein phosphatase 2 regulatory subunit B'alpha
716601 , N UPF3A UPF3A regulator of nonsense mediated mRNA decay
716860 , N GSPT1 G1 to S phase transition 1
717078 , M_N PPP2R3A protein phosphatase 2 regulatory subunit B''alpha
717474 , Y GLE1 GLE1 RNA export mediator
717603 , P SMG7 SMG7 nonsense mediated mRNA decay factor
717781 , N PAPOLG poly(A) polymerase gamma
717824 , Y MAGOHB mago homolog B, exon junction complex subunit
718256 , N NCBP1 nuclear cap binding protein subunit 1
718331 , N CPSF6 cleavage and polyadenylation specific factor 6
718420 , N NXF1 nuclear RNA export factor 1
718894 , Y PPP2R5C protein phosphatase 2 regulatory subunit B'gamma
719446 , Y SMG5 SMG5 nonsense mediated mRNA decay factor
719929 , Y PPP2R1A protein phosphatase 2 scaffold subunit Aalpha
720288 , Y UPF1 UPF1 RNA helicase and ATPase
721291 , N SMG6 SMG6 nonsense mediated mRNA decay factor
721624 , N PABPN1L PABPN1 like, cytoplasmic
721735 , Y PPP1CA protein phosphatase 1 catalytic subunit alpha
722026 , Y PPP2R5B protein phosphatase 2 regulatory subunit B'beta
722436 , N SYMPK symplekin
100423163 , N TARDBP TAR DNA binding protein
100423536 , N MSI2 musashi RNA binding protein 2
100427242 , N PELO pelota mRNA surveillance and ribosome rescue factor
100428826 , N RBM8A RNA binding motif protein 8A
100429853 , Y PAPOLB poly(A) polymerase beta
100430132 , N RNMT RNA guanine-7 methyltransferase
106995243 , N LOC106995243 polyadenylate-binding protein 1-like 2
114669841 , N PPP2R3B protein phosphatase 2 regulatory subunit B''beta
114675563 , N LOC114675563 polyadenylate-binding protein 1-like


List of genes in cfa


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
403557 , Y PPP1CC protein phosphatase 1 catalytic subunit gamma
403558 , Y PPP1CB protein phosphatase 1 catalytic subunit beta
403608 , Y PPP2CA protein phosphatase 2 catalytic subunit alpha
403609 , Y PPP1CA protein phosphatase 1 catalytic subunit alpha
403907 , N PNN pinin, desmosome associated protein
474441 , N CPSF6 cleavage and polyadenylation specific factor 6
474772 , S NCBP1 nuclear cap binding protein subunit 1
474839 , Y_N DDX39B DExD-box helicase 39B
475126 , N CPSF1 cleavage and polyadenylation specific factor 1
475148 , N MSI2 musashi RNA binding protein 2
475827 , N RBM8A RNA binding motif protein 8A
475922 , N EIF4A3 eukaryotic translation initiation factor 4A3
475948 , Y CSTF3 cleavage stimulation factor subunit 3
476066 , N CPSF7 cleavage and polyadenylation specific factor 7
476200 , N RNMT RNA guanine-7 methyltransferase
476211 , Y HBS1L HBS1 like translational GTPase
476431 , N SYMPK symplekin
476664 , Y UPF1 UPF1 RNA helicase and ATPase
476786 , N PCF11 PCF11 cleavage and polyadenylation factor subunit
477132 , N NXT1 nuclear transport factor 2 like export factor 1
477238 , N PABPC1L poly(A) binding protein cytoplasmic 1 like
477374 , K PPP2R2A protein phosphatase 2 regulatory subunit Balpha
477695 , Y MAGOHB mago homolog B, exon junction complex subunit
478053 , N PPP2R2B protein phosphatase 2 regulatory subunit Bbeta
478123 , S NUDT21 nudix hydrolase 21
478185 , N SRRM1 serine and arginine repetitive matrix 1
478234 , N TARDBP TAR DNA binding protein
478603 , Y NCBP2 nuclear cap binding protein subunit 2
479338 , N PELO pelota mRNA surveillance and ribosome rescue factor
479444 , Y PPP2R1B protein phosphatase 2 scaffold subunit Abeta
479562 , Y MAGOH mago homolog, exon junction complex subunit
479567 , M SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase
479657 , Y DDX19B DEAD-box helicase 19B
479658 , Y_M DDX19A DEAD-box helicase 19A
479832 , N SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
479846 , N GSPT1 G1 to S phase transition 1
479880 , N RNPS1 RNA binding protein with serine rich domain 1
480035 , P SMG7 SMG7 nonsense mediated mRNA decay factor
480230 , Y CPSF2 cleavage and polyadenylation specific factor 2
480247 , N ACIN1 apoptotic chromatin condensation inducer 1
480289 , Y_N PPP2R3C protein phosphatase 2 regulatory subunit B''gamma
480349 , N PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon
480430 , N PAPOLA poly(A) polymerase alpha
480436 , N PPP2R5C protein phosphatase 2 regulatory subunit B'gamma
480528 , N CASC3 CASC3 exon junction complex subunit
480704 , Y GLE1 GLE1 RNA export mediator
481031 , N UPF3B UPF3B regulator of nonsense mediated mRNA decay
481101 , Y PYM1 PYM homolog 1, exon junction complex associated factor
481382 , Y PAPOLG poly(A) polymerase gamma
481806 , N PPP2R5D protein phosphatase 2 regulatory subunit B'delta
481914 , Y RNGTT RNA guanylyltransferase and 5'-phosphatase
482464 , N PABPC4 poly(A) binding protein cytoplasmic 4
482873 , Y PPP2CB protein phosphatase 2 catalytic subunit beta
483755 , Y PPP2R5B protein phosphatase 2 regulatory subunit B'beta
483780 , Y_N NXF1 nuclear RNA export factor 1
483825 , N PABPC4L poly(A) binding protein cytoplasmic 4 like
484335 , Y PPP2R1A protein phosphatase 2 scaffold subunit Aalpha
484740 , Y WDR82 WD repeat domain 82
485672 , N PPP2R3A protein phosphatase 2 regulatory subunit B''alpha
487130 , N UPF2 UPF2 regulator of nonsense mediated mRNA decay
489859 , Y CPSF4 cleavage and polyadenylation specific factor 4
490280 , Y PPP2R5A protein phosphatase 2 regulatory subunit B'alpha
490414 , N SMG5 SMG5 nonsense mediated mRNA decay factor
491199 , N SMG6 SMG6 nonsense mediated mRNA decay factor
491441 , N NXF3 nuclear RNA export factor 3
491587 , N PPP2R2D protein phosphatase 2 regulatory subunit Bdelta
492002 , N PABPC5 poly(A) binding protein cytoplasmic 5
492024 , N LOC492024 nuclear RNA export factor 2-like
607836 , N UPF3A UPF3A regulator of nonsense mediated mRNA decay
607948 , Y ALYREF Aly/REF export factor
608299 , S LOC608299 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
608717 , Y ETF1 eukaryotic translation termination factor 1
608851 , S PABPN1L PABPN1 like, cytoplasmic
609404 , N SAP18 Sin3A associated protein 18
610161 , Y CLP1 cleavage factor polyribonucleotide kinase subunit 1
610262 , N PPP2R2C protein phosphatase 2 regulatory subunit Bgamma
611488 , N MSI1 musashi RNA binding protein 1
612751 , N PABPC1 poly(A) binding protein cytoplasmic 1
612933 , Y_N CSTF1 cleavage stimulation factor subunit 1
612945 , N NXT2 nuclear transport factor 2 like export factor 2
612980 , N FIP1L1 factor interacting with PAPOLA and CPSF1
100170671 , N PABPN1 poly(A) binding protein nuclear 1
100683271 , N DAZAP1 DAZ associated protein 1
100684102 , Y LOC100684102 protein mago nashi homolog
100684233 , Y LOC100684233 cleavage and polyadenylation specificity factor subunit 5-like
100684503 , M NCBP2L nuclear cap binding protein subunit 2 like
100687327 , Y_N LOC100687327 nuclear RNA export factor 2-like
100855509 , Y PPP2R3B protein phosphatase 2 regulatory subunit B''beta
100856093 , N WDR33 WD repeat domain 33
100856381 , N FUS FUS RNA binding protein
100856414 , M CPSF3 cleavage and polyadenylation specific factor 3
102156482 , N LOC102156482 RNA-binding protein Musashi homolog 2
106558889 , Y PAPOLB poly(A) polymerase beta
106559223 , S CPSF4L cleavage and polyadenylation specific factor 4 like
119866251 , N CSTF2T cleavage stimulation factor subunit 2 tau variant
119868207 , N PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A


List of genes in sce


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
850806 , N CFT2 cleavage polyadenylation factor subunit CFT2
850983 , Y_N YSH1 cleavage polyadenylation factor subunit YSH1
851217 , Y TPD3 protein phosphatase 2A structural subunit TPD3
851255 , N PTA1 RNA-processing protein PTA1
851320 , N GLE1 nucleoporin GLE1
851339 , N PPH22 phosphoprotein phosphatase 2A catalytic subunit PPH22
851421 , Y_N PPH21 phosphoprotein phosphatase 2A catalytic subunit PPH21
851475 , Y_N SUB2 ATP-dependent RNA helicase SUB2
851584 , N FAL1 ATP-dependent RNA helicase FAL1
851752 , N SUP35 translation termination factor GTPase eRF3
851776 , N REF2 RNA-processing protein REF2
851814 , N PCF11 Pcf11p
851895 , N CFT1 cleavage/polyadenylation factor CFT1
851988 , N YRA1 RNA-binding protein YRA1
852046 , N PPZ2 salt homeostasis regulator
852440 , Y SUP45 translation termination factor eRF1
852538 , N ABD1 mRNA (guanine-N7)-methyltransferase
852685 , N CDC55 protein phosphatase 2A regulatory subunit CDC55
852838 , N RNA15 Rna15p
852963 , N UPF3 Upf3p
853060 , N PTI1 cleavage polyadenylation factor subunit PTI1
853555 , N FIP1 cleavage polyadenylation factor subunit FIP1
853649 , Y_N MTR2 Mtr2p
853806 , N MPE1 cleavage polyadenylation factor subunit MPE1
853851 , N SWD2 WD-repeat containing protein SWD2
853871 , N PAP1 polynucleotide adenylyltransferase PAP1
853959 , N HBS1 ribosome dissociation factor GTPase HBS1
853997 , N HRP1 Hrp1p
854179 , N RTS1 protein phosphatase 2A regulatory subunit RTS1
854211 , N DBP5 ATP-dependent RNA helicase DBP5
854243 , N SKI7 Ski7p
854351 , N SYC1 cleavage polyadenylation factor subunit SYC1
854424 , N CLP1 cleavage polyadenylation factor subunit CLP1
854817 , N SGN1 Sgn1p
854992 , N PPZ1 salt homeostasis regulator
855083 , N RNA14 cleavage polyadenylation factor subunit RNA14
855104 , N NAM7 ATP-dependent RNA helicase NAM7
855155 , N STO1 Sto1p
855399 , N PFS2 cleavage polyadenylation factor subunit PFS2
855499 , N SSU72 RNA polymerase II subunit A C-terminal domain phosphatase
855731 , Y_N DOM34 ribosome dissociation factor DOM34
855923 , M_N PPQ1 protein-serine/threonine phosphatase
855925 , N CBC2 nuclear cap-binding protein subunit CBC2
855934 , N MEX67 Mex67p
856222 , N YTH1 cleavage polyadenylation factor RNA-binding subunit YTH1
856476 , N NMD2 Nmd2p
856870 , N GLC7 type 1 serine/threonine-protein phosphatase catalytic subunit GLC7
856912 , Y_N PAB1 polyadenylate-binding protein


List of genes in spo


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
2539066 , N SPCC126.13c putative SAP128 family histone deacetylase complex subunit
2539179 , N sds21 serine/threonine protein phosphatase Sds21
2539280 , N pcm1 P-TEFb-cap methyltransferase Pcm1
2539371 , N SPCC18B5.06 putative translation release factor eRF1 family protein
2539379 , N par1 protein phosphatase regulatory subunit Par1
2539459 , N SPCC825.05c putative splicing coactivator SRRM1
2539479 , Y sup35 eRF3-like class 2 translation release factor sup35
2539694 , Y cft1 putative protein Cft1
2539695 , N SPBC13G1.14c putative RNA-binding protein
2539733 , N pab2 poly(A)-binding protein Pab2
2539791 , N SPBC13A2.01c putative nuclear cap-binding complex large subunit
2539954 , N cft2 putative cleavage/polyadenylation factor Cft2/CPSF-73
2539975 , N SPBC12C2.06 putative ATP-dependent RNA helicase Dbp5
2540072 , Y ppa2 serine/threonine protein phosphatase Ppa2
2540184 , N SPBC106.12c putative THO complex subunit
2540395 , N gle1 nucleoporin Gle1
2540522 , N mnh1 protein mago nashi
2540565 , N mlo3 RNA-binding protein Mlo3
2540727 , N mex67 nucleoporin Mex67
2540788 , N swd2 Set1C complex subunit Swd2.1
2540798 , N mni1 protein mni1
2541099 , Y pla1 poly(A) polymerase Pla1
2541150 , N SPBC660.15 putative cleavage factor complex subunit
2541193 , N dis2 serine/threonine protein phosphatase PP1
2541385 , N SPBP8B7.15c putative RBBP6 family ubiquitin-protein ligase E3
2541505 , N pabp mRNA export shuttling protein
2541506 , M yth1 cleavage and polyadenylation specificity factor complex subunit Yth1
2541519 , N pab1 protein phosphatase regulatory subunit Pab1
2541600 , N rna14 putative cleavage and polyadenylation specificity factor complex subunit Rna14
2541602 , N SPAC1F5.10 putative ATP-dependent RNA helicase
2541873 , N SPAC22G7.10 fip1-like pre-mRNA polyadenylation factor
2541907 , K SPAC22H10.05c putative cleavage and polyadenylation specificity factor complex subunit
2541998 , Y_N SPAC23A1.09 putative RNA-binding protein
2542052 , Y_X ppa1 minor serine/threonine protein phosphatase Ppa1
2542147 , N upf2 nonsense-mediated decay protein Upf2
2542148 , Y sup45 translation release factor eRF1
2542255 , N pzh1 serine/threonine protein phosphatase Pzh1
2542258 , Y_N ysh1 cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1
2542327 , N upf1 ATP-dependent RNA helicase Upf1
2542433 , N uap56 ATP-dependent RNA helicase Uap56
2542556 , N SPAC6G10.07 putative nuclear cap-binding complex large subunit
2542891 , N par2 protein phosphatase regulatory subunit Par2
2542908 , M upf3 protein upf3
2543037 , N SPAC4G9.04c putative cleavage and polyadenylation specificity factor
2543042 , Y_N paa1 protein phosphatase regulatory subunit Paa1
2543089 , N pfs2 WD repeat protein Pfs2
2543452 , N ssu72 putative phosphoric ester hydrolase Ssu72
2543462 , N SPAC644.16 putative RNA-binding protein
2543538 , N pta1 cleavage and polyadenylation specificity factor complex subunit Pta1
2543644 , N nxt1 mRNA export receptor Nxt1


List of genes in fca


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
101080492 , Y GLE1 GLE1 RNA export mediator
101080677 , N RNPS1 RNA binding protein with serine rich domain 1
101080709 , N PABPC4L poly(A) binding protein cytoplasmic 4 like
101081075 , Y PPP2R1B protein phosphatase 2 scaffold subunit Abeta
101081164 , Y PPP2R5B protein phosphatase 2 regulatory subunit B'beta
101081170 , N MSI1 musashi RNA binding protein 1
101081529 , Y WDR82 WD repeat domain 82
101082092 , N CPSF7 cleavage and polyadenylation specific factor 7
101082538 , Y_N GSPT1 G1 to S phase transition 1
101082602 , N NCBP1 nuclear cap binding protein subunit 1
101082998 , N PAPOLG poly(A) polymerase gamma
101083238 , N PABPC1 poly(A) binding protein cytoplasmic 1
101083266 , N PPP2R5D protein phosphatase 2 regulatory subunit B'delta
101083345 , N PAPOLA poly(A) polymerase alpha
101083363 , S PPP2R3A protein phosphatase 2 regulatory subunit B''alpha
101083563 , N SAP18 Sin3A associated protein 18
101083615 , Y NCBP2 nuclear cap binding protein subunit 2
101083726 , Y PPP2R1A protein phosphatase 2 scaffold subunit Aalpha
101083734 , Y PPP2R5A protein phosphatase 2 regulatory subunit B'alpha
101083847 , Y_N DDX39B DExD-box helicase 39B
101084083 , N PPP2R2B protein phosphatase 2 regulatory subunit Bbeta
101084114 , Y_N PPP2R3C protein phosphatase 2 regulatory subunit B''gamma
101084147 , N MSI2 musashi RNA binding protein 2
101084940 , N UPF3B UPF3B regulator of nonsense mediated mRNA decay
101085293 , Y PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon
101085423 , S CPSF4 cleavage and polyadenylation specific factor 4
101085434 , Y SMG5 SMG5 nonsense mediated mRNA decay factor
101085619 , N NXT1 nuclear transport factor 2 like export factor 1
101085899 , N UPF2 UPF2 regulator of nonsense mediated mRNA decay
101086093 , N PPP2R2D protein phosphatase 2 regulatory subunit Bdelta
101086122 , N CSTF2 cleavage stimulation factor subunit 2
101086792 , M SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase
101087286 , Y_N DDX19A DEAD-box helicase 19A
101087411 , N PNN pinin, desmosome associated protein
101087696 , Y LOC101087696 ATP-dependent RNA helicase DDX19B
101088454 , Y SMG7 SMG7 nonsense mediated mRNA decay factor
101088644 , Y ETF1 eukaryotic translation termination factor 1
101088901 , N FUS FUS RNA binding protein
101089420 , Y GSPT2 G1 to S phase transition 2
101089510 , Y CPSF3 cleavage and polyadenylation specific factor 3
101089931 , N PABPC1L poly(A) binding protein cytoplasmic 1 like
101089960 , Y CSTF3 cleavage stimulation factor subunit 3
101089983 , N PELO pelota mRNA surveillance and ribosome rescue factor
101090389 , Y CSTF2T cleavage stimulation factor subunit 2 tau variant
101090496 , N NXT2 nuclear transport factor 2 like export factor 2
101090931 , Y_N CSTF1 cleavage stimulation factor subunit 1
101091047 , Y CLP1 cleavage factor polyribonucleotide kinase subunit 1
101091784 , N PPP2R2C protein phosphatase 2 regulatory subunit Bgamma
101092180 , N FIP1L1 factor interacting with PAPOLA and CPSF1
101092223 , N PABPN1L PABPN1 like, cytoplasmic
101092276 , Y PYM1 PYM homolog 1, exon junction complex associated factor
101092292 , N NXF1 nuclear RNA export factor 1
101092311 , S CPSF4L cleavage and polyadenylation specific factor 4 like
101092859 , N ACIN1 apoptotic chromatin condensation inducer 1
101092919 , Y LOC101092919 nuclear RNA export factor 2-like
101092932 , Y PPP1CB protein phosphatase 1 catalytic subunit beta
101092953 , N WDR33 WD repeat domain 33
101092974 , N SYMPK symplekin
101093649 , Y RNMT RNA guanine-7 methyltransferase
101093790 , Y MAGOH mago homolog, exon junction complex subunit
101093921 , N LOC101093921 nuclear RNA export factor 2
101094164 , N LOC101094164 nuclear RNA export factor 3-like
101094427 , Y PPP2R5C protein phosphatase 2 regulatory subunit B'gamma
101094465 , N EIF4A3 eukaryotic translation initiation factor 4A3
101094667 , Y PPP2CB protein phosphatase 2 catalytic subunit beta
101095427 , N PABPC4 poly(A) binding protein cytoplasmic 4
101095867 , N CASC3 CASC3 exon junction complex subunit
101095921 , N LOC101095921 serine/arginine repetitive matrix protein 1-like
101096043 , Y UPF1 UPF1 RNA helicase and ATPase
101096436 , N SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase
101096701 , N CPSF1 cleavage and polyadenylation specific factor 1
101096893 , Y RNGTT RNA guanylyltransferase and 5'-phosphatase
101096952 , N DAZAP1 DAZ associated protein 1
101097257 , N TARDBP TAR DNA binding protein
101097466 , Y_N PPP2R3B protein phosphatase 2 regulatory subunit B''beta
101097813 , Y_N CPSF2 cleavage and polyadenylation specific factor 2
101098241 , N SRRM1 serine and arginine repetitive matrix 1
101098563 , N RBM8A RNA binding motif protein 8A
101099028 , N PABPC5 poly(A) binding protein cytoplasmic 5
101099159 , N SMG6 SMG6 nonsense mediated mRNA decay factor
101099267 , N UPF3A UPF3A regulator of nonsense mediated mRNA decay
101099271 , Y PPP2CA protein phosphatase 2 catalytic subunit alpha
101099546 , Y PPP2R2A protein phosphatase 2 regulatory subunit Balpha
101099901 , N PCF11 PCF11 cleavage and polyadenylation factor subunit
101100135 , Y HBS1L HBS1 like translational GTPase
101100167 , M ALYREF Aly/REF export factor
101100922 , Y PPP1CC protein phosphatase 1 catalytic subunit gamma
101101144 , Y MAGOHB mago homolog B, exon junction complex subunit
101101394 , N CPSF6 cleavage and polyadenylation specific factor 6
101101604 , M NUDT21 nudix hydrolase 21
102901720 , N PABPN1 poly(A) binding protein nuclear 1
102902484 , Y PAPOLB poly(A) polymerase beta
105259665 , N LOC105259665 nuclear RNA export factor 3-like
105260217 , N LOC105260217 polyadenylate-binding protein 1-like 2
109492306 , Y PPP1CA protein phosphatase 1 catalytic subunit alpha
111558721 , N PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B
111558772 , N LOC111558772 pinin-like
111559045 , S LOC111559045 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like


The preparation time of this page was 3.4 [sec].