GO:1990841 promoter-specific chromatin binding

59 hsa genes in this database.
72 mmu genes in this database.
74 rno genes in this database.
10 gga genes in this database.
14 dre genes in this database.
8 dme genes in this database.
2 cel genes in this database.
1 cfa genes in this database.
7 sce genes in this database.
1 spo genes in this database.

[QuickGO]

term: promoter-specific chromatin binding
goid: GO:1990841

Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
hsa PRDM1 PR/SET domain 1 639 ISS
hsa BMI1 BMI1 proto-oncogene, polycomb ring finger 648 IBA,IDA
hsa GADD45A growth arrest and DNA damage inducible alpha 1647 IEA
hsa DDX5 DEAD-box helicase 5 1655 ISS
hsa DHX9 DExH-box helicase 9 1660 IMP
hsa DNMT1 DNA methyltransferase 1 1786 IDA
hsa E2F4 E2F transcription factor 4 1874 IDA
hsa EGR1 early growth response 1 1958 IDA
hsa ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2067 IEA
hsa ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit 2071 IEA
hsa ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2072 IEA
hsa EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 2146 IDA
hsa FOXC1 forkhead box C1 2296 ISS
hsa FOXC2 forkhead box C2 2303 ISS
hsa GLI2 GLI family zinc finger 2 2736 IDA
hsa GTF2B general transcription factor IIB 2959 IDA
hsa GTF2F1 general transcription factor IIF subunit 1 2962 IDA
hsa HDAC1 histone deacetylase 1 3065 IEA
hsa HDAC2 histone deacetylase 2 3066 IEA
hsa HNRNPU heterogeneous nuclear ribonucleoprotein U 3192 IBA,ISS
hsa HSF1 heat shock transcription factor 1 3297 IDA
hsa PDX1 pancreatic and duodenal homeobox 1 3651 IEA
hsa ISL1 ISL LIM homeobox 1 3670 ISS
hsa MECP2 methyl-CpG binding protein 2 4204 IEA
hsa FOXO4 forkhead box O4 4303 IEA
hsa MYOD1 myogenic differentiation 1 4654 ISS
hsa NDN necdin, MAGE family member 4692 IEA
hsa NRL neural retina leucine zipper 4901 IEA
hsa NUP98 nucleoporin 98 and 96 precursor 4928 IMP
hsa POLR2A RNA polymerase II subunit A 5430 IDA
hsa POU4F2 POU class 4 homeobox 2 5458 ISS
hsa MED1 mediator complex subunit 1 5469 IEA
hsa RBL1 RB transcriptional corepressor like 1 5933 IDA
hsa RBL2 RB transcriptional corepressor like 2 5934 IDA
hsa SOX10 SRY-box transcription factor 10 6663 IEA
hsa STAT1 signal transducer and activator of transcription 1 6772 IDA
hsa TAF10 TATA-box binding protein associated factor 10 6881 IBA,IEA
hsa TP53 tumor protein p53 7157 IDA
hsa PCGF2 polycomb group ring finger 2 7703 IBA
hsa KLF4 Kruppel like factor 4 9314 IDA
hsa MACROH2A1 macroH2A.1 histone 9555 ISS
hsa HDAC4 histone deacetylase 4 9759 IEA
hsa SETDB1 SET domain bifurcated histone lysine methyltransferase 1 9869 IDA
hsa USP3 ubiquitin specific peptidase 3 9960 IEA
hsa TRIM28 tripartite motif containing 28 10155 IBA,IDA
hsa PPARGC1A PPARG coactivator 1 alpha 10891 IEA
hsa EHMT2 euchromatic histone lysine methyltransferase 2 10919 IDA
hsa IKZF3 IKAROS family zinc finger 3 22806 IDA
hsa KDM1A lysine demethylase 1A 23028 ISS
hsa ZNF609 zinc finger protein 609 23060 ISS
hsa SIRT1 sirtuin 1 23411 IEA
hsa NIPBL NIPBL cohesin loading factor 25836 ISS
hsa CHD7 chromodomain helicase DNA binding protein 7 55636 IEA
hsa ZNF304 zinc finger protein 304 57343 IDA
hsa PRDM15 PR/SET domain 15 63977 ISS
hsa WDR13 WD repeat domain 13 64743 IEA
hsa ZNF750 zinc finger protein 750 79755 IBA,IDA
hsa PCGF1 polycomb group ring finger 1 84759 IBA
hsa ZNF683 zinc finger protein 683 257101 ISS
mmu Atf2 activating transcription factor 2 11909 IDA,ISO
mmu Atf4 activating transcription factor 4 11911 IDA,ISO
mmu Prdm1 PR domain containing 1, with ZNF domain 12142 IDA
mmu Bmi1 Bmi1 polycomb ring finger oncogene 12151 IBA,IDA,ISO
mmu Runx1 runt related transcription factor 1 12394 ISO
mmu Gadd45a growth arrest and DNA-damage-inducible 45 alpha 13197 IDA
mmu Ddx5 DEAD box helicase 5 13207 IDA
mmu Dhx9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 13211 ISO
mmu Dnmt1 DNA methyltransferase (cytosine-5) 1 13433 ISO
mmu Egr1 early growth response 1 13653 ISO
mmu Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 13870 IDA
mmu Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 13872 IDA
mmu Esr1 estrogen receptor 1 (alpha) 13982 ISO
mmu Esr2 estrogen receptor 2 (beta) 13983 ISO
mmu Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 14056 ISO
mmu Foxc2 forkhead box C2 14234 IDA
mmu Gli2 GLI-Kruppel family member GLI2 14633 IDA,ISO
mmu Hdac2 histone deacetylase 2 15182 ISO
mmu Hsf1 heat shock factor 1 15499 ISO
mmu Isl1 ISL1 transcription factor, LIM/homeodomain 16392 IDA
mmu Klf4 Kruppel-like factor 4 (gut) 16600 ISO
mmu Smad3 SMAD family member 3 17127 IDA
mmu Mecp2 methyl CpG binding protein 2 17257 IDA,ISO
mmu Foxc1 forkhead box C1 17300 IDA
mmu Myod1 myogenic differentiation 1 17927 IDA
mmu Ndn necdin, MAGE family member 17984 IDA
mmu Nfe2l1 nuclear factor, erythroid derived 2,-like 1 18023 IDA
mmu Nrl neural retina leucine zipper gene 18185 IDA
mmu Pdx1 pancreatic and duodenal homeobox 1 18609 ISO
mmu Pou4f2 POU domain, class 4, transcription factor 2 18997 IDA
mmu Med1 mediator complex subunit 1 19014 IDA
mmu Pparg peroxisome proliferator activated receptor gamma 19016 IDA
mmu Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 19017 ISO
mmu Rbl1 RB transcriptional corepressor like 1 19650 ISO
mmu Rbl2 RB transcriptional corepressor like 2 19651 ISO
mmu Polr2a polymerase (RNA) II (DNA directed) polypeptide A 20020 ISO
mmu Sox10 SRY (sex determining region Y)-box 10 20665 ISO
mmu Stat1 signal transducer and activator of transcription 1 20846 ISO
mmu Trim28 tripartite motif-containing 28 21849 IBA,ISO
mmu Trp53 transformation related protein 53 22059 ISO
mmu Pcgf2 polycomb group ring finger 2 22658 IBA
mmu Ikzf3 IKAROS family zinc finger 3 22780 ISO
mmu Taf10 TATA-box binding protein associated factor 10 24075 IBA,IDA
mmu Macroh2a1 macroH2A.1 histone 26914 IDA
mmu Ercc4 excision repair cross-complementing rodent repair deficiency, complementation group 4 50505 IDA
mmu Hnrnpu heterogeneous nuclear ribonucleoprotein U 51810 IBA,IDA,ISO
mmu Suz12 SUZ12 polycomb repressive complex 2 subunit 52615 IDA
mmu Irf3 interferon regulatory factor 3 54131 IDA
mmu Foxo4 forkhead box O4 54601 ISO
mmu Foxo1 forkhead box O1 56458 IDA
mmu Pcgf1 polycomb group ring finger 1 69837 IBA
mmu Nipbl NIPBL cohesin loading factor 71175 IDA
mmu Wdr13 WD repeat domain 13 73447 IDA
mmu Setdb1 SET domain, bifurcated 1 84505 IDA,ISO
mmu Sirt1 sirtuin 1 93759 IDA
mmu Gtf2f1 general transcription factor IIF, polypeptide 1 98053 ISO
mmu Kdm1a lysine (K)-specific demethylase 1A 99982 IDA
mmu E2f4 E2F transcription factor 4 104394 ISO
mmu Ehmt2 euchromatic histone lysine N-methyltransferase 2 110147 IDA,ISO
mmu Prdm15 PR domain containing 15 114604 IDA
mmu Hdac4 histone deacetylase 4 208727 ISO
mmu L3mbtl2 L3MBTL2 polycomb repressive complex 1 subunit 214669 IDA
mmu Zfp609 zinc finger protein 609 214812 IDA
mmu Rfpl4b ret finger protein-like 4B 215919 IBA
mmu Taf5 TATA-box binding protein associated factor 5 226182 IDA
mmu Gtf2b general transcription factor IIB 229906 IDA,ISO
mmu Nup98 nucleoporin 98 269966 ISO
mmu Taf1 TATA-box binding protein associated factor 1 270627 IDA
mmu Zfp750 zinc finger protein 750 319530 IBA,ISO
mmu Chd7 chromodomain helicase DNA binding protein 7 320790 IDA
mmu Hdac1 histone deacetylase 1 433759 IDA
mmu Zfp683 zinc finger protein 683 100503878 IDA
rno Egr1 early growth response 1 24330 IDA,IEA,ISO
rno Tp53 tumor protein p53 24842 ISO,ISS
rno Esr1 estrogen receptor 1 24890 IDA
rno Gadd45a growth arrest and DNA-damage-inducible, alpha 25112 IEA,ISO
rno Stat1 signal transducer and activator of transcription 1 25124 ISO
rno Esr2 estrogen receptor 2 25149 IDA
rno Smad3 SMAD family member 3 25631 ISO
rno Pparg peroxisome proliferator-activated receptor gamma 25664 ISO
rno Sox10 SRY-box transcription factor 10 29361 IMP
rno Macroh2a1 macroH2A.1 histone 29384 ISO
rno Mecp2 methyl CpG binding protein 2 29386 IDA,IEA,ISO
rno Pdx1 pancreatic and duodenal homeobox 1 29535 IDA
rno Runx1 RUNX family transcription factor 1 50662 IDA
rno Isl1 ISL LIM homeobox 1 64444 ISO,ISS
rno Hsf1 heat shock transcription factor 1 79245 IDA,ISO
rno Atf4 activating transcription factor 4 79255 ISO
rno Atf2 activating transcription factor 2 81647 ISO
rno Gtf2b general transcription factor IIB 81673 IEA,ISO,ISS
rno Nup98 nucleoporin 98 and 96 precursor 81738 ISO,ISS
rno Rbl2 RB transcriptional corepressor like 2 81758 ISO
rno Ppargc1a PPARG coactivator 1 alpha 83516 IDA
rno Dnmt1 DNA methyltransferase 1 84350 IEA,ISO,ISS
rno Foxo1 forkhead box O1 84482 ISO
rno Hdac2 histone deacetylase 2 84577 IDA
rno Klf4 Kruppel like factor 4 114505 ISO
rno Trim28 tripartite motif-containing 28 116698 IBA,ISO,ISS
rno Hnrnpu heterogeneous nuclear ribonucleoprotein U 117280 IBA,IDA,ISO,ISS
rno Ep300 E1A binding protein p300 170915 IDA
rno Pou4f2 POU class 4 homeobox 2 171355 ISO,ISS
rno Foxc2 forkhead box C2 171356 ISO,ISS
rno Pcgf2 polycomb group ring finger 2 287662 IBA
rno Ddx5 DEAD-box helicase 5 287765 ISO
rno Nrl neural retina leucine zipper 290221 ISO
rno Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit 291703 ISO
rno Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit 292673 ISO
rno Irf3 interferon regulatory factor 3 292892 ISO
rno Taf10 TATA-box binding protein associated factor 10 293345 IBA,ISO
rno Taf5 TATA-box binding protein associated factor 5 294018 ISO
rno Nipbl NIPBL, cohesin loading factor 294787 ISO
rno Hdac1 histone deacetylase 1 297893 ISO
rno L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 300320 ISO
rno RGD1562871 similar to BMI1-like protein 302366 IBA
rno Foxo4 forkhead box O4 302415 IDA
rno Ikzf3 IKAROS family zinc finger 3 303511 ISO
rno Prdm15 PR/SET domain 15 304054 ISO
rno Ercc4 ERCC excision repair 4, endonuclease catalytic subunit 304719 ISO
rno Gli2 GLI family zinc finger 2 304729 ISO
rno Dhx9 DExH-box helicase 9 304859 ISO
rno Bmi1 BMI1 proto-oncogene, polycomb ring finger 307151 IBA,ISO
rno Ndn necdin, MAGE family member 308690 ISO
rno Sirt1 sirtuin 1 309757 ISO
rno Prdm1 PR/SET domain 1 309871 ISO
rno Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 312299 ISO
rno Pcgf1 polycomb group ring finger 1 312480 IBA
rno Chd7 chromodomain helicase DNA binding protein 7 312974 ISO
rno Gtf2f1 general transcription factor IIF subunit 1 316123 ISO,ISS
rno Taf1 TATA-box binding protein associated factor 1 317256 ISO
rno Wdr13 WD repeat domain 13 317370 ISO
rno Myod1 myogenic differentiation 1 337868 IEA,ISO,ISS
rno Nfe2l1 nuclear factor, erythroid 2-like 1 360610 ISO
rno Ehmt2 euchromatic histone lysine methyltransferase 2 361798 ISO
rno Usp3 ubiquitin specific peptidase 3 363084 IDA
rno Hdac4 histone deacetylase 4 363287 IDA
rno Zfp609 zinc finger protein 609 363412 ISO
rno Polr2a RNA polymerase II subunit A 363633 ISO
rno Foxc1 forkhead box C1 364706 ISO
rno Med1 mediator complex subunit 1 497991 ISO
rno Kdm1a lysine demethylase 1A 500569 ISO
rno Rbl1 RB transcriptional corepressor like 1 680111 ISO
rno Suz12 SUZ12 polycomb repressive complex 2 subunit 688041 ISO
rno Znf750 zinc finger protein 750 688328 IBA,ISO
rno Setdb1 SET domain bifurcated histone lysine methyltransferase 1 689883 ISO
rno Zfp683 zinc finger protein 683 100359438 ISO
rno E2f4 E2F transcription factor 4 100360427 ISO
gga EGR1 early growth response 1 373931 ISS
gga HDAC1 histone deacetylase 1 373961 IEA
gga MYOD1 myogenic differentiation 1 374048 ISS
gga H2AFY H2A histone family, member Y 395858 IEA
gga GLI2 GLI family zinc finger 2 395956 ISS
gga DNMT1 DNA methyltransferase 1 396011 ISS
gga TP53 tumor protein p53 396200 ISS
gga ISL1 ISL LIM homeobox 1 396383 IEA
gga LOC420362 heat shock transcription factor 1 420362 ISS
gga BMI1 BMI1 proto-oncogene, polycomb ring finger 493647 IBA,ISS
dre egr1 early growth response 1 30498 ISS
dre myod1 myogenic differentiation 1 30513 ISS
dre tp53 tumor protein p53 30590 ISS
dre bmi1a bmi1 polycomb ring finger oncogene 1a 321505 IBA,ISS
dre trim33l tripartite motif containing 33, like 327484 IBA
dre hnrnpub heterogeneous nuclear ribonucleoprotein Ub 334490 IBA
dre pcgf1 polycomb group ring finger 1 368900 IBA
dre bmi1b bmi1 polycomb ring finger oncogene 1b 394249 IBA,ISS
dre znf750 zinc finger protein 750 550483 IBA,ISS
dre setdb1a SET domain bifurcated histone lysine methyltransferase 1a 553292 ISS
dre taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor 556710 IBA
dre hnrnpua heterogeneous nuclear ribonucleoprotein Ua 566326 IBA
dre setdb1b SET domain bifurcated histone lysine methyltransferase 1b 768131 ISS
dre ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 768133 ISS
dme Taf10b TBP-associated factor 10b 33468 IBA
dme Taf10 TBP-associated factor 10 33469 IBA
dme Utx Utx histone demethylase 34377 IDA
dme Su(z)2 Suppressor of zeste 2 36432 IBA
dme MBD-R2 MBD-R2 41498 IDA
dme Nup98-96 Nucleoporin 98-96kD 42816 IDA
dme ttk tramtrack 48317 IDA
dme p53 p53 2768677 IDA
cel hsf-1 HSF_DOMAIN domain-containing protein 173078 IDA
cel taf-10 Transcription initiation factor TFIID subunit 10 3564983 IBA
cfa TP53 tumor protein p53 403869 ISS
sce TAF10 Taf10p 851745 IBA
sce NUP170 Nup170p 852199 IDA
sce SPT10 Spt10p 853315 IBA,IDA
sce TDH2 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH2 853465 IDA
sce RPA190 DNA-directed RNA polymerase I core subunit RPA190 854519 IDA
sce SEC28 coatomer subunit epsilon 854734 IDA
sce PAB1 polyadenylate-binding protein 856912 IDA
spo taf10 SAGA complex/transcription factor TFIID complex subunit Taf10 2540614 IBA


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