GO:0006284 base-excision repair

71 hsa genes in this database.
38 mmu genes in this database.
40 rno genes in this database.
7 gga genes in this database.
25 dre genes in this database.
13 dme genes in this database.
10 cel genes in this database.
19 sce genes in this database.
18 spo genes in this database.

[QuickGO]

term: base-excision repair
goid: GO:0006284

Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
hsa PARP1 poly(ADP-ribose) polymerase 1 142
hsa APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 328 IBA,IDA
hsa DNA2 DNA replication helicase/nuclease 2 1763 IDA
hsa ERCC5 ERCC excision repair 5, endonuclease 2073
hsa ERCC6 ERCC excision repair 6, chromatin remodeling factor 2074 IMP
hsa FEN1 flap structure-specific endonuclease 1 2237
hsa HMGB1 high mobility group box 1 3146 IEA
hsa LIG1 DNA ligase 1 3978 IDA
hsa LIG3 DNA ligase 3 3980
hsa MPG N-methylpurine DNA glycosylase 4350 IBA
hsa MUTYH mutY DNA glycosylase 4595 IBA
hsa NTHL1 nth like DNA glycosylase 1 4913
hsa OGG1 8-oxoguanine DNA glycosylase 4968 TAS
hsa PCNA proliferating cell nuclear antigen 5111
hsa POLB DNA polymerase beta 5423 IBA,IDA,IMP
hsa POLD1 DNA polymerase delta 1, catalytic subunit 5424
hsa POLD2 DNA polymerase delta 2, accessory subunit 5425
hsa POLE DNA polymerase epsilon, catalytic subunit 5426
hsa POLG DNA polymerase gamma, catalytic subunit 5428
hsa RFC1 replication factor C subunit 1 5981
hsa RFC2 replication factor C subunit 2 5982
hsa RFC3 replication factor C subunit 3 5983
hsa RFC4 replication factor C subunit 4 5984
hsa RFC5 replication factor C subunit 5 5985
hsa RPA1 replication protein A1 6117 IDA
hsa RPA2 replication protein A2 6118 IDA
hsa RPA3 replication protein A3 6119 IBA,IDA
hsa TDG thymine DNA glycosylase 6996 IDA
hsa TERF1 telomeric repeat binding factor 1 7013
hsa TERF2 telomeric repeat binding factor 2 7014
hsa UNG uracil DNA glycosylase 7374 TAS
hsa WRN WRN RecQ like helicase 7486 IDA
hsa XPA XPA, DNA damage recognition and repair factor 7507 IBA
hsa XRCC1 X-ray repair cross complementing 1 7515 IBA
hsa HMGA2 high mobility group AT-hook 2 8091 IDA
hsa H3-4 H3.4 histone 8290
hsa H4C9 H4 clustered histone 9 8294
hsa H4C1 H4 clustered histone 1 8359
hsa H4C4 H4 clustered histone 4 8360
hsa H4C6 H4 clustered histone 6 8361
hsa H4C12 H4 clustered histone 12 8362
hsa H4C11 H4 clustered histone 11 8363
hsa H4C3 H4 clustered histone 3 8364
hsa H4C8 H4 clustered histone 8 8365
hsa H4C2 H4 clustered histone 2 8366
hsa H4C5 H4 clustered histone 5 8367
hsa H4C13 H4 clustered histone 13 8368
hsa H4C14 H4 clustered histone 14 8370
hsa PARG poly(ADP-ribose) glycohydrolase 8505
hsa MBD4 methyl-CpG binding domain 4, DNA glycosylase 8930
hsa PARP2 poly(ADP-ribose) polymerase 2 10038 IEA
hsa HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 10075 IBA,IMP
hsa POLD3 DNA polymerase delta 3, accessory subunit 10714
hsa POLQ DNA polymerase theta 10721 IDA
hsa PNKP polynucleotide kinase 3'-phosphatase 11284
hsa SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 23583 IDA
hsa POT1 protection of telomeres 1 25913
hsa TINF2 TERF1 interacting nuclear factor 2 26277
hsa APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 27301 IBA
hsa POLL DNA polymerase lambda 27343
hsa TERF2IP TERF2 interacting protein 54386
hsa ADPRS ADP-ribosylserine hydrolase 54936
hsa USP47 ubiquitin specific peptidase 47 55031 IMP
hsa PRMT6 protein arginine methyltransferase 6 55170 TAS
hsa NEIL3 nei like DNA glycosylase 3 55247 IBA,IDA,ISS
hsa POLD4 DNA polymerase delta 4, accessory subunit 57804
hsa ACD ACD shelterin complex subunit and telomerase recruitment factor 65057
hsa NEIL1 nei like DNA glycosylase 1 79661 IBA,IDA
hsa H4-16 H4 histone 16 121504
hsa NEIL2 nei like DNA glycosylase 2 252969 IBA
hsa H4C15 H4 clustered histone 15 554313
mmu Parp1 poly (ADP-ribose) polymerase family, member 1 11545 IMP
mmu Parp2 poly (ADP-ribose) polymerase family, member 2 11546 IMP
mmu Apex1 apurinic/apyrimidinic endonuclease 1 11792 IBA,ISO
mmu Hmgb1 high mobility group box 1 15289 IMP
mmu Hmga1 high mobility group AT-hook 1 15361 ISO
mmu Hmga2 high mobility group AT-hook 2 15364 ISO
mmu Lig1 ligase I, DNA, ATP-dependent 16881 ISO
mmu Lig3 ligase III, DNA, ATP-dependent 16882
mmu Nthl1 nth (endonuclease III)-like 1 (E.coli) 18207 IEA
mmu Ogg1 8-oxoguanine DNA-glycosylase 1 18294 IDA,IMP,ISO
mmu Pcna proliferating cell nuclear antigen 18538
mmu Polb polymerase (DNA directed), beta 18970 IBA,ISO,TAS
mmu Pold1 polymerase (DNA directed), delta 1, catalytic subunit 18971
mmu Pole polymerase (DNA directed), epsilon 18973
mmu Rpa2 replication protein A2 19891 ISO
mmu Tdg thymine DNA glycosylase 21665 IDA,ISO
mmu Ung uracil DNA glycosylase 22256 ISO
mmu Wrn Werner syndrome RecQ like helicase 22427 ISO
mmu Xpa xeroderma pigmentosum, complementation group A 22590 IBA
mmu Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 22592
mmu Xrcc1 X-ray repair complementing defective repair in Chinese hamster cells 1 22594 IBA,ISO
mmu Sirt6 sirtuin 6 50721 IMP
mmu Poll polymerase (DNA directed), lambda 56626
mmu Huwe1 HECT, UBA and WWE domain containing 1 59026 IBA,ISO
mmu Rpa3 replication protein A3 68240 IBA,ISO
mmu Rpa1 replication protein A1 68275 ISO
mmu Mutyh mutY DNA glycosylase 70603 IBA
mmu Smug1 single-strand selective monofunctional uracil DNA glycosylase 71726 ISO,ISS
mmu Neil1 nei endonuclease VIII-like 1 (E. coli) 72774 IBA,ISO
mmu Usp47 ubiquitin specific peptidase 47 74996 ISO
mmu Apex2 apurinic/apyrimidinic endonuclease 2 77622 IBA
mmu Polq polymerase (DNA directed), theta 77782 ISO
mmu Hmga1b high mobility group AT-hook 1B 111241 ISO
mmu Neil3 nei like 3 (E. coli) 234258 IBA,IDA,ISO
mmu Mpg N-methylpurine-DNA glycosylase 268395 IBA,IMP
mmu Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 319955 ISO
mmu Dna2 DNA replication helicase/nuclease 2 327762 ISO
mmu Neil2 nei like 2 (E. coli) 382913 IBA
rno Mpg N-methylpurine-DNA glycosylase 24561 IBA,IEA,ISO
rno Hmgb1 high mobility group box 1 25459 ISO
rno Parp1 poly (ADP-ribose) polymerase 1 25591 ISO
rno Pcna proliferating cell nuclear antigen 25737
rno Polb DNA polymerase beta 29240 IBA,ISO,ISS,TAS
rno Nthl1 nth-like DNA glycosylase 1 29541
rno Rpa2 replication protein A2 59102 ISO,ISS,NAS
rno Pold1 DNA polymerase delta 1, catalytic subunit 59294
rno Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 79116 IBA,ISO
rno Lig1 DNA ligase 1 81513 ISO
rno Ogg1 8-oxoguanine DNA glycosylase 81528 IDA,ISO
rno Hmga2 high mobility group AT-hook 2 84017 ISO,ISS
rno Fen1 flap structure-specific endonuclease 1 84490 IEA
rno Xrcc1 X-ray repair cross complementing 1 84495 IBA,IDA,TAS
rno Polg DNA polymerase gamma, catalytic subunit 85472
rno Tdg thymine-DNA glycosylase 114521 ISO
rno Hmga1 high mobility group AT-hook 1 117062 ISO
rno Mutyh mutY DNA glycosylase 170841 IBA,IEA
rno Rpa1 replication protein A1 287524 ISO
rno Polq DNA polymerase theta 288079 ISO
rno Parp2 poly (ADP-ribose) polymerase 2 290027 ISO
rno Neil3 nei-like DNA glycosylase 3 290729 IBA,ISO
rno Wrn WRN RecQ like helicase 290805 ISO
rno Rpa3 replication protein A3 296883 IBA,ISO
rno Xpa XPA, DNA damage recognition and repair factor 298074 IBA
rno Sirt6 sirtuin 6 299638 ISO
rno Ercc5 ERCC excision repair 5, endonuclease 301382
rno Lig3 DNA ligase 3 303369
rno Pole DNA polymerase epsilon, catalytic subunit 304573
rno Ung uracil-DNA glycosylase 304577 IDA,ISO,TAS
rno Neil2 nei-like DNA glycosylase 2 305957 IBA
rno Ercc6 ERCC excision repair 6, chromatin remodeling factor 306274 ISO
rno Usp47 ubiquitin specific peptidase 47 308896 ISO
rno Dna2 DNA replication helicase/nuclease 2 309762 IEA,ISO
rno Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 315344 IDA,ISO
rno Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 317628 IBA
rno Poll DNA polymerase lambda 361767
rno Slc25a16 solute carrier family 25 member 16 361836 IEA
rno Neil1 nei-like DNA glycosylase 1 367090 IBA,ISO
rno Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 501546 IBA,IEA,ISO,ISS
gga PCNA proliferating cell nuclear antigen 373984
gga HMGB1 high mobility group box 1 395724 IEA
gga NTHL1 nth like DNA glycosylase 1 416551
gga RPA1 replication protein A1 417563 IEA
gga USP47 ubiquitin specific peptidase 47 423032 ISS
gga DNA2 DNA replication helicase/nuclease 2 423688 ISS
gga FEN1 flap structure-specific endonuclease 1 769677 IEA
dre fen1 flap structure-specific endonuclease 1 386707 IEA
dre apex2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 393115 IBA
dre rpa3 replication protein A3 393196 IBA
dre neil1 nei-like DNA glycosylase 1 393253 IBA,IEA
dre xpa xeroderma pigmentosum, complementation group A 393443 IBA
dre unga uracil DNA glycosylase a 393949 IEA
dre apex1 APEX nuclease (multifunctional DNA repair enzyme) 1 406730 IBA
dre xrcc1 X-ray repair complementing defective repair in Chinese hamster cells 1 445480 IBA
dre neil3 nei-like DNA glycosylase 3 492463 IBA,IEA
dre zgc:110224 zgc:110224 550335 IBA
dre pole polymerase (DNA directed), epsilon 553405
dre tdg.1 thymine DNA glycosylase, tandem duplicate 1 553789
dre polb polymerase (DNA directed), beta 554204 IBA,ISS
dre pold1 polymerase (DNA directed), delta 1, catalytic subunit 556456
dre si:ch211-141o9.10 si:ch211-141o9.10 558198 IBA
dre tdg.2 thymine DNA glycosylase, tandem duplicate 2 558951
dre huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 559439 IBA
dre dna2 DNA replication helicase/nuclease 2 559535 ISS
dre lig3 ligase III, DNA, ATP-dependent 563276
dre mpg N-methylpurine DNA glycosylase 566516 IBA,IEA
dre smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 570901 IEA
dre si:xx-by187g17.9 si:xx-by187g17.9 571211 IEA
dre ungb uracil DNA glycosylase b 571301 IEA
dre ogg1 8-oxoguanine DNA glycosylase 791194 IEA
dre nthl1 nth-like DNA glycosylase 1 100008368 IEA
dme Xpac Xeroderma pigmentosum group A-like 31357 IBA
dme XRCC1 XRCC1 31451 IBA
dme Ogg1 8-oxoguanine DNA glycosylase 31806 IMP
dme RPA3 Replication protein A3 32113 IBA
dme Rrp1 Recombination repair protein 1 33500 IBA
dme CG9272 uncharacterized protein 35365
dme DNApol-delta DNA polymerase delta 39746
dme rgn regeneration 40368 IBA
dme DNAlig3 DNA ligase 3 41518
dme CG5285 uncharacterized protein 42078 ISS
dme DNApol-epsilon255 DNA polymerase epsilon 255kD subunit 42758
dme Thd1 Thd1 43796
dme RecQ4 RecQ4 helicase 53438 IMP
cel crn-1 Flap endonuclease 1 171917 IEA
cel ercc-1 ERCC (DNA excision repair protein) homolog 172867 IMP
cel exo-3 DNA-(apurinic or apyrimidinic site) endonuclease 173069 IBA,IDA
cel pole-1 DNA polymerase epsilon catalytic subunit 173368
cel apn-1 Apurinic-apyrimidinic endonuclease 174291 IBA,IDA
cel polq-1 DNA polymerase theta 175810
cel ung-1 Uracil-DNA glycosylase 176633 IDA,IEA
cel F10C2.4 DNA polymerase delta catalytic subunit 179652
cel xpa-1 XPA_C domain-containing protein 187120 IBA,IMP
cel nth-1 Endonuclease III homolog 187770 IEA
sce NTG1 bifunctional N-glycosylase/AP lyase NTG1 851218 IDA,IEA
sce CDC9 DNA ligase (ATP) CDC9 851391 IMP
sce POL3 DNA-directed DNA polymerase delta POL3 851456
sce XRS2 Xrs2p 851975 IGI,IMP
sce APN2 DNA-(apurinic or apyrimidinic site) lyase APN2 852262 IBA,IGI
sce POL31 DNA-directed DNA polymerase delta subunit POL31 853462 TAS
sce POL32 DNA polymerase delta subunit POL32 853500 TAS
sce APN1 DNA-(apurinic or apyrimidinic site) lyase APN1 853746 IBA,IDA
sce RAD27 multifunctional nuclease RAD27 853747 IEA
sce PAP2 non-canonical poly(A) polymerase PAP2 854034 IGI,IMP
sce NTG2 bifunctional N-glycosylase/AP lyase NTG2 854114 IDA,IEA
sce STH1 RSC chromatin remodeling complex ATPase subunit STH1 854680 IMP
sce OGG1 8-oxoguanine glycosylase OGG1 854942 IEA
sce UNG1 uracil-DNA glycosylase 854987 IEA
sce RAD14 DNA repair protein RAD14 855241 IBA
sce MRE11 MRX complex nuclease subunit 855264 IMP
sce POL2 DNA polymerase epsilon catalytic subunit 855459 IMP
sce RAD50 MRX complex DNA-binding subunit 855471 IMP
sce MAG1 DNA-3-methyladenine glycosylase II 856885 IEA
spo ssb3 DNA replication factor A subunit Ssb3 2538775 IBA
spo ung1 uracil DNA N-glycosylase Ung1 2538855 IMP
spo thp1 uracil DNA N-glycosylase Thp1 2539432
spo tdp1 tyrosyl-DNA phosphodiesterase Tdp1 2539579 IGI,IMP
spo cdc6 DNA polymerase delta catalytic subunit Cdc6 2540255
spo uve1 endonuclease Uve1 2540345 IMP
spo cdc20 DNA polymerase epsilon catalytic subunit Pol2 2540627
spo mag2 DNA-3-methyladenine glycosidase Mag2 2540646 EXP
spo apn2 AP-endonuclease Apn2 2540679 IBA,IC
spo adl1 putative DNA ligase 2541111
spo rhp14 DNA repair protein 2541120 IBA
spo pol4 DNA polymerase X family 2541638 IC
spo cdc17 ATP-dependent DNA ligase Cdc17 2541849 ISS
spo pnk1 DNA kinase/phosphatase Pnk1 2542032 IMP
spo myh1 adenine DNA glycosylase Myh1 2542727 IBA
spo rad2 FEN-1 endonuclease Rad2 2543164 IDA
spo nth1 DNA endonuclease III 2543510 IDA
spo mag1 DNA-3-methyladenine glycosylase Mag1 2543565


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