GO:0001046 core promoter sequence-specific DNA binding

43 hsa genes in this database.
49 mmu genes in this database.
48 rno genes in this database.
13 gga genes in this database.
6 dre genes in this database.
12 dme genes in this database.
11 cel genes in this database.
15 sce genes in this database.
6 spo genes in this database.

[QuickGO]

term: core promoter sequence-specific DNA binding
goid: GO:0001046

Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
hsa CEBPB CCAAT enhancer binding protein beta 1051
hsa DR1 down-regulator of transcription 1 1810 IBA
hsa EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 2146
hsa FOS Fos proto-oncogene, AP-1 transcription factor subunit 2353
hsa GBX2 gastrulation brain homeobox 2 2637
hsa NR3C1 nuclear receptor subfamily 3 group C member 1 2908 IDA
hsa GTF2A1 general transcription factor IIA subunit 1 2957
hsa GTF2B general transcription factor IIB 2959
hsa H2AZ1 H2A.Z variant histone 1 3015
hsa H3-3A H3.3 histone A 3020
hsa H3-3B H3.3 histone B 3021
hsa HDAC1 histone deacetylase 1 3065 IDA
hsa MMP12 matrix metallopeptidase 12 4321 IMP
hsa MYC MYC proto-oncogene, bHLH transcription factor 4609 IDA
hsa NPM1 nucleophosmin 1 4869 IDA
hsa PAX6 paired box 6 5080
hsa POU2F1 POU class 2 homeobox 1 5451
hsa RELA RELA proto-oncogene, NF-kB subunit 5970
hsa REST RE1 silencing transcription factor 5978
hsa SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 6597
hsa SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 6598
hsa SNAPC3 small nuclear RNA activating complex polypeptide 3 6619 IBA
hsa STAT1 signal transducer and activator of transcription 1 6772
hsa TAF1 TATA-box binding protein associated factor 1 6872
hsa TAF4 TATA-box binding protein associated factor 4 6874 IDA
hsa TBP TATA-box binding protein 6908 IDA
hsa KLF10 Kruppel like factor 10 7071 ISS
hsa TP53 tumor protein p53 7157 IDA
hsa UBTF upstream binding transcription factor 7343
hsa ZBTB17 zinc finger and BTB domain containing 17 7709 IDA
hsa TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C 9013
hsa TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B 9014
hsa TBPL1 TATA-box binding protein like 1 9519
hsa MACROH2A1 macroH2A.1 histone 9555
hsa DRAP1 DR1 associated protein 1 10589 IBA
hsa RUVBL2 RuvB like AAA ATPase 2 10856
hsa BAZ2A bromodomain adjacent to zinc finger domain 2A 11176
hsa PARK7 Parkinsonism associated deglycase 11315 IC
hsa AGO1 argonaute RISC component 1 26523 IMP
hsa FOXP1 forkhead box P1 27086 IDA
hsa AGO2 argonaute RISC catalytic component 2 27161 IMP
hsa RRN3 RRN3 homolog, RNA polymerase I transcription factor 54700
hsa PIH1D1 PIH1 domain containing 1 55011
mmu Cebpb CCAAT/enhancer binding protein (C/EBP), beta 12608
mmu Dr1 down-regulator of transcription 1 13486 IBA
mmu Egr1 early growth response 1 13653
mmu Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 14056
mmu Fos FBJ osteosarcoma oncogene 14281
mmu Gbx2 gastrulation brain homeobox 2 14472
mmu Nr3c1 nuclear receptor subfamily 3, group C, member 1 14815 ISO
mmu H3f3a H3.3 histone A 15078
mmu H3f3b H3.3 histone B 15081
mmu Mmp12 matrix metallopeptidase 12 17381 ISO
mmu Myc myelocytomatosis oncogene 17869 ISO
mmu Npm1 nucleophosmin 1 18148 ISO
mmu Pax6 paired box 6 18508
mmu Pou2f1 POU domain, class 2, transcription factor 1 18986
mmu Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) 19697
mmu Rest RE1-silencing transcription factor 19712
mmu Polr2a polymerase (RNA) II (DNA directed) polypeptide A 20020 IDA
mmu Ruvbl2 RuvB-like protein 2 20174
mmu Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 20586
mmu Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 20587
mmu Stat1 signal transducer and activator of transcription 1 20846
mmu Taf1b TATA-box binding protein associated factor, RNA polymerase I, B 21340
mmu Taf1c TATA-box binding protein associated factor, RNA polymerase I, C 21341
mmu Tbp TATA box binding protein 21374 ISO
mmu Ubtf upstream binding transcription factor, RNA polymerase I 21429
mmu Klf10 Kruppel-like factor 10 21847 IDA
mmu Nkx2-1 NK2 homeobox 1 21869 ISO
mmu Trp53 transformation related protein 53 22059 ISO
mmu Zbtb17 zinc finger and BTB domain containing 17 22642 ISO
mmu Macroh2a1 macroH2A.1 histone 26914
mmu H2az1 H2A.Z variant histone 1 51788
mmu Kcnip3 Kv channel interacting protein 3, calsenilin 56461 IMP
mmu Jph2 junctophilin 2 59091 IDA
mmu Drap1 Dr1 associated protein 1 (negative cofactor 2 alpha) 66556 IBA
mmu Fendrr Foxf1 adjacent non-coding developmental regulatory RNA 68790 IDA
mmu Pih1d1 PIH1 domain containing 1 68845
mmu Snapc3 small nuclear RNA activating complex, polypeptide 3 77634 IBA
mmu Gtf2a1 general transcription factor II A, 1 83602
mmu Rrn3 RRN3 RNA polymerase I transcription factor homolog (yeast) 106298
mmu Foxp1 forkhead box P1 108655 ISO
mmu Baz2a bromodomain adjacent to zinc finger domain, 2A 116848
mmu Taf4 TATA-box binding protein associated factor 4 228980 ISO
mmu Gtf2b general transcription factor IIB 229906
mmu Ago1 argonaute RISC catalytic subunit 1 236511 ISO
mmu Tbpl1 TATA box binding protein-like 1 237336
mmu Ago2 argonaute RISC catalytic subunit 2 239528 ISO
mmu Taf1 TATA-box binding protein associated factor 1 270627
mmu Hdac1 histone deacetylase 1 433759 ISO
mmu Myoparr myogenin promoter-associated myogenic regulatory antisense lncRNA 114004354
rno Cebpb CCAAT/enhancer binding protein beta 24253
rno Egr1 early growth response 1 24330
rno Nr3c1 nuclear receptor subfamily 3, group C, member 1 24413 ISO
rno Myc MYC proto-oncogene, bHLH transcription factor 24577 ISO
rno Tp53 tumor protein p53 24842 ISO
rno Stat1 signal transducer and activator of transcription 1 25124
rno Npm1 nucleophosmin 1 25498 ISO
rno Pax6 paired box 6 25509
rno Ubtf upstream binding transcription factor 25574
rno Nkx2-1 NK2 homeobox 1 25628 IMP
rno Macroh2a1 macroH2A.1 histone 29384
rno H2az1 H2A.Z variant histone 1 58940
rno Ago2 argonaute RISC catalytic component 2 59117 IEA,ISO
rno Kcnip3 potassium voltage-gated channel interacting protein 3 65199 ISO
rno Gtf2b general transcription factor IIB 81673
rno Klf10 Kruppel-like factor 10 81813 ISO,ISS
rno Rest RE1-silencing transcription factor 83618
rno Gtf2a1 general transcription factor 2A subunit 1 83830
rno Gbx2 gastrulation brain homeobox 2 114500
rno Mmp12 matrix metallopeptidase 12 117033 IEA,ISO
rno H3f3b H3.3 histone B 117056
rno Tbp TATA box binding protein 117526 ISO
rno Pou2f1 POU class 2 homeobox 1 171068
rno Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 171379
rno Dr1 down-regulator of transcription 1 289881 IBA
rno Pih1d1 PIH1 domain containing 1 292898
rno Ruvbl2 RuvB-like AAA ATPase 2 292907
rno Drap1 Dr1 associated protein 1 293674 IBA
rno Jph2 junctophilin 2 296345 ISO,ISS
rno Foxp1 forkhead box P1 297480 ISO
rno Hdac1 histone deacetylase 1 297893 ISO
rno Baz2a bromodomain adjacent to zinc finger domain, 2A 304601
rno Rrn3 RRN3 homolog, RNA polymerase I transcription factor 304714
rno Rela RELA proto-oncogene, NF-kB subunit 309165
rno Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 312299
rno Ago1 argonaute RISC component 1 313594 ISO
rno Zbtb17 zinc finger and BTB domain containing 17 313666 ISO
rno Fos Fos proto-oncogene, AP-1 transcription factor subunit 314322
rno Taf1 TATA-box binding protein associated factor 1 317256
rno Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C 361420
rno Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 361825
rno Snapc3 small nuclear RNA activating complex, polypeptide 3 362537 IBA
rno Polr2a RNA polymerase II subunit A 363633 ISO
rno Taf4 TATA-box binding protein associated factor 4 682097 ISO
rno Tbpl1 TATA-box binding protein like 1 689030
rno Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B 690450
rno H3f3a H3.3 histone A 100361558
rno Fendrr FOXF1 adjacent non-coding developmental regulatory RNA 104845258 ISO
gga HDAC1 histone deacetylase 1 373961
gga TBPL1 TATA-box binding protein like 1 395517
gga H2AFY H2A histone family, member Y 395858
gga CEBPB CCAAT/enhancer binding protein beta 396185 IDA
gga FOS Fos proto-oncogene, AP-1 transcription factor subunit 396512
gga LOC420362 heat shock transcription factor 1 420362 IDA
gga HSF2 heat shock transcription factor 2 421724 IDA
gga TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B 421933
gga DNMT3A DNA methyltransferase 3 alpha 421991 IDA
gga HSF3 Heat shock factor protein 3 422169 IDA
gga DR1 down-regulator of transcription 1 424496 IBA
gga H2AFZ H2A histone family, member Z 426361
gga SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 769489
dre drap1 DR1-associated protein 1 (negative cofactor 2 alpha) 321681 IBA
dre gtf2b general transcription factor IIB 324823
dre taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C 336342
dre snapc3 small nuclear RNA activating complex, polypeptide 3 394090 IBA
dre taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B 449647
dre dr1 down-regulator of transcription 1 768171 IBA
dme trr trithorax-related 31149 IDA
dme Trf2 TATA box binding protein-related factor 2 31773 IDA
dme Trf TBP-related factor 34102 IPI
dme Dref DNA replication-related element factor 34328
dme NC2beta Negative Cofactor 2beta 34875 IBA,IDA
dme Pbp49 PSEA-binding protein 49kD 35787 IBA,IDA
dme NC2alpha Negative Cofactor 2alpha 37471 IBA,IDA
dme Taf2 TBP-associated factor 2 39164
dme M1BP Motif 1 Binding Protein 41042
dme TAF1B TATA box-binding protein-associated factor RNA polymerase I subunit B 41242
dme Pbp45 PSEA-binding protein 45kD 41920 IDA
dme Brf Brf RNA polymerase III subunit 42087 IPI
cel snpc-3.2 Small nuclear RNA-activating complex polypeptide 3 171615 IBA
cel car-1 Cytokinesis, Apoptosis, RNA-associated 173158
cel hmg-12 HMG 174829
cel F23H11.2 TATA box-binding protein-associated factor RNA polymerase I subunit B 175251
cel tbx-2 T-box protein 2 175698 IDA
cel snpc-3.1 Small nuclear RNA-activating complex polypeptide 3 177331 IBA
cel drap-1 CBFD_NFYB_HMF domain-containing protein 179365 IBA
cel zip-10 Transcription factor zip-10 179599 IDA
cel dro-1 Down-regulator of transcription 1 191629 IBA
cel snpc-3.4 Small nuclear RNA-activating complex polypeptide 3 192054 IBA
cel Y48G1BL.8 Small nuclear RNA-activating complex polypeptide 3 25502999 IBA
sce BDF1 chromatin-binding protein BDF1 851115 IDA
sce BDF2 Bdf2p 851488 IDA
sce NCB2 negative cofactor 2 transcription regulator complex subunit NCB2 852006 IBA,IDA
sce RRN6 Rrn6p 852269
sce PGD1 Pgd1p 852860
sce SRB5 Srb5p 852996
sce RRN7 Rrn7p 853428
sce IXR1 DNA-binding transcription repressor IXR1 853836 IDA
sce MED4 Med4p 854345
sce RRN11 Rrn11p 854964
sce SSN8 cyclin-dependent protein serine/threonine kinase regulator SSN8 855706
sce CAM1 translation elongation factor EF1B gamma 856059 IDA
sce SRB4 Srb4p 856743
sce SPT15 TATA-binding protein 856891
sce BUR6 negative cofactor 2 transcription regulator complex subunit BUR6 856904 IBA,IDA
spo rrn7 RNA polymerase I upstream activation factor complex subunit Rrn7 2540236
spo SPBC30D10.02 putative transcription corepressor 2540406 IBA
spo php2 CCAAT-binding factor complex subunit Php2 2541161
spo rrn11 putative RNA polymerase I transcription factor subunit Rrn11 2541184
spo tbp1 TATA-binding protein (TBP) 2541582
spo dpb3 DNA polymerase epsilon subunit Dpb3 2542201 IBA


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