COXPRESdb  
version 4.0

COXPRESdb; co-expressed gene database




(last update) 2010.01.19

Draw:

  • <NetworkDrawer>
    Drawing coexpressed gene network in multiple query genes.



    • This form draws coexpressed gene network in query genes.
    • Input Entrez Gene IDs.
    • The example is 10 genes related to steroid biosynthetic process (GO:0006694)
    • Also produced is general tab-delimited file, Pajak file (.net) and Cytoscape file (.sif) to draw network using general stand-alone softwares.
    Functions
    (1) Drawing coexpressed gene network
    within query genes
    (2) Making coexpressed gene list
    from coexpressed query genes
    • Draw 2-path coexpression
    Provided as [Search > CoexSearch]
    (since 2010.02.10)

  • <HCluster>
    Hierarchical clustering for query genes





    • This form performs hierarchical clustering for query genes.
    • Input Entrez Gene IDs.

  • <CoexViewer>
    Coexpression viewer


    gene1:
    gene2:
    • This form returns scatter plot of coexpression between two genes.
    • Input two Entrez Gene IDs.
  • <ExViewer>
    Expression viewer


    gene:
    • This form returns expression pattern for the input gene.
    • Input an Entrez Gene ID for human and mouse.
  • <GOPathDrawer>
    Drawing hierarchical structures of Gene Ontology terms


    GO terms colored
    by yellow
    GO terms colored
    by green
    GO terms colored
    by blue

    • This form draws hierarchical structures of query GO terms.