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Publication:
- Official reference of COXPRESdb
- Please cite this reference when you refer to COXPRESdb.
- Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K.
COXPRESdb: a database of coexpressed gene networks in mammals.
Nucleic Acids Res. 36, D77-D82.
[PubMed]
[PDF]
- Other technical papers to construct COXPRESdb;
- For MR.
- Obayashi T, Kinoshita K. (2009)
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression.
DNA Res., 16, 249-60.
[PubMed]
[PDF]
- For stability of coexpression provided in CoexViewer.
- Kinoshita K, Obayashi T. (2009)
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.
Bioinformatics., 25, 2677-84.
[PubMed]
[PDF]
- Coexpression database for plants.
- Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K. (2009)
ATTED-II provides coexpressed gene networks for Arabidopsis.
Nucleic Acids Res., 37, D987-91.
[PubMed]
[PDF]
- Acknowledgements;
- Computation time is provided by the Super Computer System, Human Genome Center, Institute of Medical Science, The University of Tokyo.
Examples to use COXPRESdb to discuss functions of paralogous genes
- Vos MJ et al. (2009)
HSPB7 is a SC35 speckle resident small heat shock protein.
Biochim Biophys Acta., 1793, 1343-53.
[PubMed]
- Vicinanza M et al. (2008)
Function and dysfunction of the PI system in membrane trafficking.
EMBO J., 27, 2457-70.
[PubMed]
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