GO:0000469 cleavage involved in rRNA processing
27 hsa genes in this database. | |
27 mmu genes in this database. | |
26 rno genes in this database. | |
23 dre genes in this database. | |
25 dme genes in this database. | |
25 cel genes in this database. | |
85 sce genes in this database. | |
46 spo genes in this database. |
[QuickGO]
term: cleavage involved in rRNA processing
goid: GO:0000469
Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species | Symbol | Gene coexpression |
Locus page |
Full name* | Entrez Gene ID | Evidence* |
---|---|---|---|---|---|---|
hsa | EXOSC9 | exosome component 9 | 5393 | |||
hsa | EXOSC10 | exosome component 10 | 5394 | |||
hsa | RPS21 | ribosomal protein S21 | 6227 | |||
hsa | NOP14 | NOP14 nucleolar protein | 8602 | |||
hsa | BMS1 | BMS1 ribosome biogenesis factor | 9790 | |||
hsa | RCL1 | RNA terminal phosphate cyclase like 1 | 10171 | |||
hsa | TBL3 | transducin beta like 3 | 10607 | |||
hsa | RPP40 | ribonuclease P/MRP subunit p40 | 10799 | |||
hsa | EXOSC8 | exosome component 8 | 11340 | |||
hsa | EXOSC7 | exosome component 7 | 23016 | |||
hsa | RRS1 | ribosome biogenesis regulator 1 homolog | 23212 | |||
hsa | BOP1 | BOP1 ribosomal biogenesis factor | 23246 | |||
hsa | EXOSC2 | exosome component 2 | 23404 | |||
hsa | UTP20 | UTP20 small subunit processome component | 27340 | |||
hsa | NOB1 | NIN1 (RPN12) binding protein 1 homolog | 28987 | IEA | ||
hsa | ABT1 | activator of basal transcription 1 | 29777 | |||
hsa | EXOSC3 | exosome component 3 | 51010 | |||
hsa | NHP2 | NHP2 ribonucleoprotein | 55651 | IBA | ||
hsa | TSR1 | TSR1 ribosome maturation factor | 55720 | |||
hsa | KRI1 | KRI1 homolog | 65095 | |||
hsa | ERI3 | ERI1 exoribonuclease family member 3 | 79033 | |||
hsa | NOL9 | nucleolar protein 9 | 79707 | |||
hsa | UTP23 | UTP23 small subunit processome component | 84294 | |||
hsa | RRP36 | ribosomal RNA processing 36 | 88745 | IEA | ||
hsa | ERI1 | exoribonuclease 1 | 90459 | |||
hsa | ERI2 | ERI1 exoribonuclease family member 2 | 112479 | |||
hsa | NOP9 | NOP9 nucleolar protein | 161424 | |||
mmu | Bop1 | block of proliferation 1 | 12181 | |||
mmu | Npm1 | nucleophosmin 1 | 18148 | |||
mmu | Abt1 | activator of basal transcription 1 | 30946 | |||
mmu | Exosc9 | exosome component 9 | 50911 | |||
mmu | Exosc10 | exosome component 10 | 50912 | |||
mmu | Nhp2 | NHP2 ribonucleoprotein | 52530 | IBA | ||
mmu | Rrs1 | ribosome biogenesis regulator 1 | 59014 | |||
mmu | Rcl1 | RNA terminal phosphate cyclase-like 1 | 59028 | |||
mmu | Exosc3 | exosome component 3 | 66362 | |||
mmu | Exosc7 | exosome component 7 | 66446 | |||
mmu | Rps21 | ribosomal protein S21 | 66481 | |||
mmu | Eri1 | exoribonuclease 1 | 67276 | |||
mmu | Nob1 | NIN1/RPN12 binding protein 1 homolog | 67619 | IEA | ||
mmu | Nop9 | NOP9 nucleolar protein | 67842 | |||
mmu | Exosc8 | exosome component 8 | 69639 | |||
mmu | Eri2 | exoribonuclease 2 | 71151 | |||
mmu | Fcf1 | FCF1 rRNA processing protein | 73736 | |||
mmu | Nol9 | nucleolar protein 9 | 74035 | |||
mmu | Utp23 | UTP23 small subunit processome component | 78581 | |||
mmu | Tsr1 | TSR1 20S rRNA accumulation | 104662 | |||
mmu | Eri3 | exoribonuclease 3 | 140546 | |||
mmu | Rpp40 | ribonuclease P 40 subunit | 208366 | |||
mmu | Tbl3 | transducin (beta)-like 3 | 213773 | |||
mmu | Bms1 | BMS1, ribosome biogenesis factor | 213895 | |||
mmu | Kri1 | KRI1 homolog | 215194 | |||
mmu | Rrp36 | ribosomal RNA processing 36 | 224823 | IEA | ||
mmu | Exosc2 | exosome component 2 | 227715 | |||
rno | Npm1 | nucleophosmin 1 | 25498 | |||
rno | Rps21 | ribosomal protein S21 | 81775 | |||
rno | Tbl3 | transducin (beta)-like 3 | 287120 | |||
rno | Nhp2 | NHP2 ribonucleoprotein | 287273 | IBA | ||
rno | Nop9 | NOP9 nucleolar protein | 290235 | |||
rno | Rpp40 | ribonuclease P/MRP subunit p40 | 291071 | |||
rno | Nob1 | NIN1 (RPN12) binding protein 1 homolog | 291996 | IEA | ||
rno | Exosc9 | exosome component 9 | 294975 | |||
rno | Exosc8 | exosome component 8 | 295050 | |||
rno | Rrs1 | ribosome biogenesis regulator 1 homolog | 297784 | |||
rno | Fcf1 | FCF1 rRNA-processing protein | 299198 | |||
rno | Utp23 | UTP23, small subunit processome component | 299900 | |||
rno | Bop1 | BOP1 ribosomal biogenesis factor | 300050 | |||
rno | Abt1 | activator of basal transcription 1 | 306960 | |||
rno | Rcl1 | RNA terminal phosphate cyclase-like 1 | 309301 | |||
rno | Exosc3 | exosome component 3 | 313243 | |||
rno | Eri3 | ERI1 exoribonuclease family member 3 | 313535 | |||
rno | Exosc10 | exosome component 10 | 313707 | |||
rno | Nol9 | nucleolar protein 9 | 313744 | |||
rno | Exosc7 | exosome component 7 | 316098 | |||
rno | Eri1 | exoribonuclease 1 | 361159 | |||
rno | Bms1 | BMS1 ribosome biogenesis factor | 362426 | |||
rno | Exosc2 | exosome component 2 | 366017 | |||
rno | Eri2 | ERI1 exoribonuclease family member 2 | 691484 | |||
rno | Tsr1 | TSR1, ribosome maturation factor | 100360406 | |||
rno | Rrp36 | ribosomal RNA processing 36 | 100360664 | IEA | ||
dre | rrp36 | ribosomal RNA processing 36 | 321183 | IEA | ||
dre | gnl3 | guanine nucleotide binding protein-like 3 (nucleolar) | 321897 | |||
dre | exosc8 | exosome component 8 | 323016 | |||
dre | tsr1 | TSR1 ribosome maturation factor | 325037 | |||
dre | rrs1 | ribosome biogenesis regulator 1 homolog | 337399 | |||
dre | exosc10 | exosome component 10 | 394064 | |||
dre | rps21 | ribosomal protein S21 | 394166 | |||
dre | kri1 | KRI1 homolog | 402800 | |||
dre | rpp40 | ribonuclease P/MRP 40 subunit | 415238 | |||
dre | rcl1 | RNA terminal phosphate cyclase-like 1 | 445388 | |||
dre | exosc9 | exosome component 9 | 450057 | |||
dre | tbl3 | transducin beta like 3 | 492761 | |||
dre | exosc2 | exosome component 2 | 550234 | |||
dre | exosc7 | exosome component 7 | 550247 | |||
dre | bms1 | BMS1 ribosome biogenesis factor | 553241 | |||
dre | abt1 | activator of basal transcription 1 | 553568 | |||
dre | eri1 | exoribonuclease 1 | 553641 | |||
dre | eri2 | ERI1 exoribonuclease family member 2 | 553667 | |||
dre | nob1 | NIN1 (RPN12) binding protein 1 homolog | 557254 | IEA | ||
dre | exosc3 | exosome component 3 | 565000 | |||
dre | nol9 | nucleolar protein 9 | 567715 | |||
dre | gnl2 | guanine nucleotide binding protein-like 2 (nucleolar) | 793727 | |||
dre | nhp2 | NHP2 ribonucleoprotein homolog (yeast) | 100003787 | IBA | ||
dme | CG6999 | uncharacterized protein | 31837 | |||
dme | CG2972 | uncharacterized protein | 31943 | IEA | ||
dme | Rtc1 | Rtc1 | 32338 | |||
dme | CG10993 | uncharacterized protein | 32344 | |||
dme | Rrp45 | Rrp45 | 32665 | |||
dme | RpS21 | Ribosomal protein S21 | 33487 | |||
dme | CG11123 | uncharacterized protein | 35664 | |||
dme | CG1671 | uncharacterized protein | 36019 | |||
dme | Rrp42 | Rrp42 | 36766 | |||
dme | CG8414 | uncharacterized protein | 36774 | |||
dme | Snp | Snipper | 37511 | |||
dme | Rrp4 | Rrp4 | 37731 | |||
dme | CG5645 | uncharacterized protein | 39382 | |||
dme | CG7728 | uncharacterized protein | 39904 | |||
dme | Tsr1 | Tsr1 ribosome assembly factor | 40360 | |||
dme | CG8461 | uncharacterized protein | 41758 | IEA | ||
dme | Rrp6 | Rrp6 | 41798 | |||
dme | NHP2 | NHP2 | 44005 | IBA | ||
dme | CG32409 | uncharacterized protein | 318016 | |||
dme | CG32706 | uncharacterized protein | 318160 | |||
dme | CG32708 | uncharacterized protein | 318161 | |||
dme | Rrp40 | Ribosomal RNA processing 40 | 319033 | |||
dme | RNaseMRP:RNA | Ribonuclease MRP RNA | 3772365 | |||
dme | CG40813 | uncharacterized protein | 5740386 | |||
dme | CG41562 | uncharacterized protein | 5740411 | |||
cel | Y54E10BR.4 | RNA-binding protein NOB1 | 171874 | IEA | ||
cel | F57B10.8 | Uncharacterized protein | 172368 | |||
cel | tag-151 | Pre-rRNA-processing protein TSR1 homolog | 173812 | |||
cel | exos-8 | Ribosomal RNA-processing protein 43 | 174111 | |||
cel | ZK1127.5 | putative RNA 3'-terminal phosphate cyclase-like protein | 174151 | |||
cel | F54C9.9 | Protein KRI1 homolog | 174374 | |||
cel | rps-21 | 40S ribosomal protein S21 | 176011 | |||
cel | exos-9 | Exosome complex component RRP45 | 176012 | |||
cel | Y48A6B.3 | Putative H/ACA ribonucleoprotein complex subunit 2-like protein | 176531 | IBA | ||
cel | R02D3.8 | Exonuclease domain-containing protein | 176845 | |||
cel | eri-1 | 3'-5' exonuclease eri-1;Exonuclease domain-containing protein | 176868 | |||
cel | exos-2 | Ribosomal RNA-processing protein 4 | 177403 | |||
cel | ZK792.5 | Uncharacterized protein | 178103 | |||
cel | rbd-1 | RBD (RNA binding domain) protein | 178229 | |||
cel | Y61A9LA.10 | Bms1-type G domain-containing protein | 178851 | |||
cel | rrbs-1 | Ribosome biogenesis regulatory protein homolog | 179942 | |||
cel | exos-7 | RNase_PH domain-containing protein | 180369 | |||
cel | crn-4 | Cell death-related nuclease 4 | 180536 | |||
cel | exos-3 | Ribosomal RNA-processing protein 40 | 186604 | |||
cel | nol-9 | Polynucleotide 5'-hydroxyl-kinase nol-9 | 187190 | |||
cel | M02B7.2 | Exonuclease domain-containing protein | 187397 | |||
cel | Y53C12B.1 | WD_REPEATS_REGION domain-containing protein | 190203 | |||
cel | C10B5.1 | WD_REPEATS_REGION domain-containing protein | 266915 | |||
cel | crn-3 | HRDC domain-containing protein | 3565889 | |||
cel | T22H9.1 | Uncharacterized protein | 24104925 | IEA | ||
sce | KRR1 | ribosome biosynthesis protein KRR1 | 850298 | |||
sce | RRP43 | exosome non-catalytic core subunit RRP43 | 850401 | |||
sce | BUD23 | 18S rRNA (guanine1575-N7)-methyltransferase | 850414 | |||
sce | PWP2 | snoRNA-binding rRNA-processing protein PWP2 | 850422 | |||
sce | CDC4 | SCF ubiquitin ligase complex subunit CDC4 | 850539 | |||
sce | LOC1 | Loc1p | 850551 | |||
sce | GRC3 | polynucleotide 5'-hydroxyl-kinase | 850624 | |||
sce | RPS0B | ribosomal 40S subunit protein S0B | 850737 | |||
sce | FCF2 | Fcf2p | 850740 | |||
sce | REX2 | Rex2p | 850748 | |||
sce | REX3 | RNA exonuclease | 850797 | |||
sce | DIP2 | snoRNA-binding rRNA-processing protein DIP2 | 850820 | |||
sce | RPL37A | ribosomal 60S subunit protein L37A | 850882 | |||
sce | EMG1 | 18S rRNA pseudouridine methyltransferase | 850883 | |||
sce | UTP13 | Utp13p | 850919 | |||
sce | GSP1 | Ran GTPase GSP1 | 851000 | |||
sce | NHP2 | snoRNA-binding protein NHP2 | 851319 | IBA,IMP | ||
sce | SAS10 | rRNA-processing protein SAS10 | 851403 | |||
sce | NOP14 | snoRNA-binding rRNA-processing protein NOP14 | 851407 | |||
sce | RRP42 | exosome non-catalytic core subunit RRP42 | 851447 | |||
sce | TSR1 | Tsr1p | 851499 | |||
sce | RRP45 | exosome non-catalytic core subunit RRP45 | 851874 | |||
sce | FCF1 | rRNA-processing protein FCF1 | 851939 | |||
sce | RRP17 | Rrp17p | 852021 | |||
sce | UTP6 | snoRNA-binding rRNA-processing protein UTP6 | 852060 | |||
sce | RPS18A | ribosomal 40S subunit protein S18A | 852061 | |||
sce | TOM1 | E3 ubiquitin-protein ligase TOM1 | 852068 | |||
sce | RPL37B | ribosomal 60S subunit protein L37B | 852111 | |||
sce | UTP20 | Utp20p | 852282 | |||
sce | ENP1 | snoRNA-binding rRNA-processing protein ENP1 | 852549 | |||
sce | RAI1 | decapping nuclease | 852646 | |||
sce | ROK1 | RNA-dependent ATPase ROK1 | 852704 | |||
sce | DBP3 | RNA-dependent ATPase DBP3 | 852802 | |||
sce | RRP46 | exosome non-catalytic core subunit RRP46 | 852987 | |||
sce | MTR3 | exosome non-catalytic core subunit MTR3 | 853062 | |||
sce | SKI6 | exosome non-catalytic core subunit SKI6 | 853109 | |||
sce | RPS0A | ribosomal 40S subunit protein S0A | 853128 | |||
sce | NOP19 | Nop19p | 853166 | |||
sce | RNH70 | Rnh70p | 853193 | |||
sce | RPL17B | ribosomal 60S subunit protein L17B | 853262 | |||
sce | RPS21B | ribosomal 40S subunit protein S21B | 853305 | |||
sce | UTP10 | snoRNA-binding rRNA-processing protein UTP10 | 853335 | |||
sce | UTP18 | Utp18p | 853376 | |||
sce | MTR4 | ATP-dependent RNA helicase MTR4 | 853397 | |||
sce | NOP9 | RNA-binding RNA processing protein NOP9 | 853445 | |||
sce | MPP10 | rRNA-processing protein MPP10 | 853458 | |||
sce | RPL17A | ribosomal 60S subunit protein L17A | 853674 | |||
sce | UTP11 | rRNA-processing protein UTP11 | 853762 | |||
sce | RPS21A | ribosomal 40S subunit protein S21A | 853931 | |||
sce | LAS1 | rRNA-processing protein LAS1 | 853937 | |||
sce | RRP40 | exosome non-catalytic core subunit RRP40 | 854023 | |||
sce | BRX1 | ribosome biogenesis protein BRX1 | 854078 | |||
sce | DIS3 | exosome catalytic subunit DIS3 | 854138 | |||
sce | RCL1 | rRNA-processing endoribonuclease | 854152 | |||
sce | RRP6 | exosome nuclease subunit RRP6 | 854162 | |||
sce | UTP23 | rRNA-binding ribosome biosynthesis protein UTP23 | 854165 | |||
sce | RAT1 | ssRNA exonuclease RAT1 | 854213 | |||
sce | NOB1 | rRNA-binding endoribonuclease | 854221 | IEA | ||
sce | BUD21 | Bud21p | 854245 | |||
sce | PNO1 | Pno1p | 854317 | |||
sce | RRP36 | rRNA-processing protein RRP36 | 854461 | IEA,IMP | ||
sce | RRS1 | Rrs1p | 854469 | |||
sce | NOP58 | RNA-processing protein NOP58 | 854487 | |||
sce | UTP14 | Utp14p | 854881 | |||
sce | RPS18B | ribosomal 40S subunit protein S18B | 854982 | |||
sce | RRP5 | Rrp5p | 855269 | |||
sce | KRI1 | Kri1p | 855408 | |||
sce | CSL4 | exosome non-catalytic core subunit CSL4 | 855489 | |||
sce | RLP7 | Rlp7p | 855730 | |||
sce | MPP6 | Mpp6p | 855758 | |||
sce | ESF2 | RNA-binding ATPase activator ESF2 | 855790 | |||
sce | BMS1 | GTPase BMS1 | 855884 | |||
sce | MRD1 | RNA-binding ribosome biosynthesis protein MRD1 | 856228 | |||
sce | RRP9 | Rrp9p | 856255 | |||
sce | NOC4 | ribosome biosynthesis protein NOC4 | 856267 | |||
sce | RPS27B | ribosomal 40S subunit protein S27B | 856415 | |||
sce | CIC1 | Cic1p | 856449 | IBA | ||
sce | RRP4 | exosome non-catalytic core subunit RRP4 | 856466 | |||
sce | NOP10 | snoRNP complex protein NOP10 | 856471 | IMP | ||
sce | LRP1 | Lrp1p | 856481 | |||
sce | DBP8 | ATP-dependent RNA helicase DBP8 | 856574 | |||
sce | UTP7 | Utp7p | 856815 | |||
sce | LCP5 | Lcp5p | 856864 | |||
sce | SNR17A | 9164981 | ||||
sce | SNR17B | 9164985 | ||||
spo | SPCC830.09c | putative Rnase P/MRP subunit | 2538895 | |||
spo | SPCC16C4.05 | putative Rnase P/MRP subunit | 2538975 | |||
spo | rps2802 | 40S ribosomal protein S28 | 2539085 | IDA | ||
spo | cti1 | Cut3-interacting putative exosome subunit Cti1 | 2539105 | |||
spo | SPCC757.08 | putative exosome subunit Rrp45 | 2539106 | |||
spo | SPCC830.03 | putative polynucleotide kinase Grc3 | 2539329 | |||
spo | utp13 | putative U3 snoRNP-associated protein Utp13 | 2539337 | |||
spo | csl4 | putative exosome subunit Csl4 | 2539351 | |||
spo | SPCC16C4.19 | putative RNase MRP subunit | 2539536 | |||
spo | rrp46 | putative exosome subunit Rrp46 | 2539660 | |||
spo | SPBC13G1.09 | putative bystin family U3 and U14 snoRNA associated protein | 2539887 | |||
spo | SPBC1703.01c | putative Rnase P/MRP subunit | 2539947 | |||
spo | SPBC16C6.12c | Las1-like protein | 2540034 | |||
spo | pac1 | double-strand-specific ribonuclease Pac1 | 2540084 | |||
spo | SPBC16G5.10 | putative exosome subunit Rrp42 | 2540116 | |||
spo | SPBC17D1.03c | putative exosome subunit Rrp43 | 2540189 | |||
spo | SPBC32H8.04c | putative rRNA processing protein Fcf1 | 2540218 | |||
spo | rrs1 | putative ribosome biogenesis protein Rrs1 | 2540324 | |||
spo | eri1 | double-strand siRNA ribonuclease Eri1 | 2540347 | |||
spo | bms1 | putative GTP-binding protein Bms1 | 2540390 | |||
spo | dis3 | putative 3'-5' exoribonuclease subunit Dis3 | 2540398 | |||
spo | SPBC211.08c | exosome complex component mtr3 | 2540412 | |||
spo | esf2 | putative U3 snoRNP-associated protein Esf2 | 2540503 | |||
spo | rps21 | 40S ribosomal protein S21 | 2540806 | |||
spo | rpl701 | 60S ribosomal protein L7 | 2540841 | |||
spo | pop7 | putative Rnase P/MRP subunit Pop7 | 2541332 | |||
spo | SPAC1486.09 | putative ribosome biogenesis protein Nob1 | 2541448 | |||
spo | SPAC25B8.16 | putative Rnase P/MRP subunit | 2541548 | |||
spo | SPAC22G7.05 | putative krr family protein | 2541654 | |||
spo | SPAC23H4.15 | putative ribosome biogenesis protein Tsr1 | 2541779 | |||
spo | SPAC2F7.14c | putative exosome subunit Rrp4 | 2541813 | |||
spo | SPAC22A12.12c | putative exosome subunit Rrp40 | 2541837 | |||
spo | nop9 | putative RNA-binding protein Nop9 | 2542044 | |||
spo | rex3 | putative exonuclease Rex3 | 2542165 | |||
spo | nhp2 | box H/ACA snoRNP complex subunit Nhp2 | 2542369 | IBA | ||
spo | dhp1 | 5'-3' exoribonuclease Dhp1 | 2542674 | |||
spo | SPAC12G12.06c | putative rRNA processing protein | 2542936 | |||
spo | SPAC6C3.09 | putative Rnase P subunit | 2543013 | |||
spo | SPAC3A12.04c | putative RNase P and RNase MRP subunit p30 | 2543062 | |||
spo | SPAC323.08 | putative ribonuclease MRP complex subunit | 2543088 | |||
spo | SPAC823.04 | hypothetical protein | 2543403 | ISO | ||
spo | rrp41 | putative exosome 3'-5' phosphorolytic exoribonuclease Rrp41 | 2543451 | |||
spo | SPAC637.09 | putative ribonuclease H70 | 2543505 | |||
spo | rrp6 | putative exosome 3'-5' exoribonuclease subunit Rrp6 | 2543630 | |||
spo | pop8 | putative RNase P and RNase MRP subunit Pop8 | 3361273 | |||
spo | mrp1 | 5802869 |