COXPRESdb : GeneID search result

[←][→] mmu Srrt Gene

functional annotation

Function

serrate RNA effector molecule homolog (Arabidopsis)

GO BP

GO:0031053 [list] [network] primary miRNA processing	(7 genes)	IBA IMP ISO
GO:0097150 [list] [network] neuronal stem cell population maintenance	(24 genes)	IMP
GO:0031047 [list] [network] gene silencing by RNA	(152 genes)	IEA
GO:0050769 [list] [network] positive regulation of neurogenesis	(297 genes)	IMP
GO:0006397 [list] [network] mRNA processing	(415 genes)	IEA
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(3270 genes)	IDA

GO CC

GO:0016604 [list] [network] nuclear body	(732 genes)	IBA
GO:1990904 [list] [network] ribonucleoprotein complex	(831 genes)	ISO
GO:0005654 [list] [network] nucleoplasm	(3580 genes)	IDA ISO
GO:0032991 [list] [network] protein-containing complex	(5540 genes)	ISO
GO:0005634 [list] [network] nucleus	(7226 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(11434 genes)	IDA

GO MF

GO:0140262 [list] [network] mRNA cap binding complex binding	(4 genes)	ISO
GO:0030674 [list] [network] protein-macromolecule adaptor activity	(267 genes)	ISO
GO:0003677 [list] [network] DNA binding	(2338 genes)	IDA
GO:0003676 [list] [network] nucleic acid binding	(3446 genes)	IEA
GO:0005515 [list] [network] protein binding	(9507 genes)	IPI

KEGG

Protein

NP_001103379.1 NP_001103380.1 NP_001346531.1 NP_113582.1 XP_006504693.1 XP_006504694.1 XP_030110787.1 XP_030110788.1 XP_030110789.1 XP_030110790.1 XP_036021525.1 XP_036021526.1

BLAST

NP_001103379.1 NP_001103380.1 NP_001346531.1 NP_113582.1 XP_006504693.1 XP_006504694.1 XP_030110787.1 XP_030110788.1 XP_030110789.1 XP_030110790.1 XP_036021525.1 XP_036021526.1

Orthologous

[Ortholog page] Ars2 (dme) SRRT (hsa) E01A2.2 (cel) srrt (dre) SRRT (cfa) Srrt (rno) SRRT (mcc) SRRT (fca)

Subcellular
localization
wolf

nucl 5, cyto_nucl 5, cyto 4, cyto_mito 2	(predict for NP_001103379.1)
nucl 6, cyto 4, cyto_mito 2	(predict for NP_001103380.1)
nucl 6, cyto 4, cyto_mito 2	(predict for NP_001346531.1)
nucl 5, cyto_nucl 5, cyto 4, cyto_mito 2	(predict for NP_113582.1)
nucl 7, cyto_nucl 5, cyto 3, cyto_mito 2	(predict for XP_006504693.1)
mito 5, cyto 2, cyto_nucl 1, pero 1, E.R. 1, extr 1, E.R._golg 1	(predict for XP_006504694.1)
mito 5, cyto 2, cyto_nucl 1, pero 1, E.R. 1, extr 1, E.R._golg 1	(predict for XP_030110787.1)
cyto 7, nucl 2, mito 1, E.R. 1, E.R._mito 1	(predict for XP_030110788.1)
cyto 7, nucl 2, mito 1, E.R. 1, E.R._mito 1	(predict for XP_030110789.1)
cyto 7, nucl 2, mito 1, E.R. 1, E.R._mito 1	(predict for XP_030110790.1)
mito 5, cyto 2, cyto_nucl 1, pero 1, E.R. 1, extr 1, E.R._golg 1	(predict for XP_036021525.1)
cyto 7, nucl 2, mito 1, E.R. 1, E.R._mito 1	(predict for XP_036021526.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mmu03040	Spliceosome	8
mmu03013	Nucleocytoplasmic transport	2
mmu03015	mRNA surveillance pathway	2

Genes directly connected with Srrt on the network
coex z^*	Locus	Function^*	Coexpression detail	CoexPub	Entrez Gene ID^*
9.5	U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	[detail]	0	22185
9.2	Hnrnpm	heterogeneous nuclear ribonucleoprotein M	[detail]	1	76936
8.7	Acin1	apoptotic chromatin condensation inducer 1	[detail]	0	56215
8.3	Ddx39b	DEAD box helicase 39b	[detail]	0	53817
7.6	Prpf3	pre-mRNA processing factor 3	[detail]	1	70767
6.2	Rbm28	RNA binding motif protein 28	[detail]	0	68272
6.0	Gripap1	GRIP1 associated protein 1	[detail]	0	54645
6.0	Dpp9	dipeptidylpeptidase 9	[detail]	0	224897

Coexpressed
gene list

Gene expression

All samples

Tissue specificity^*

The preparation time of this page was 0.4 [sec].